From a50f6cd0bf84e74ab7e685b8512325634963c6a8 Mon Sep 17 00:00:00 2001
From: labkey-susanh <susanh@labkey.com>
Date: Mon, 23 May 2022 20:28:40 -0700
Subject: [PATCH] Remove use of jboss repository that is so flaky; opencharts
 is now available in labkey's Artifactory instance

---
 covidseq/build.gradle  | 4 ----
 mGAP/build.gradle      | 4 ----
 primeseq/build.gradle  | 4 ----
 tcrdb/build.gradle     | 4 ----
 variantdb/build.gradle | 8 --------
 5 files changed, 24 deletions(-)

diff --git a/covidseq/build.gradle b/covidseq/build.gradle
index 669459dd8..ce26d84e7 100644
--- a/covidseq/build.gradle
+++ b/covidseq/build.gradle
@@ -6,10 +6,6 @@ plugins {
 
 repositories {
     mavenCentral()
-    // Added for opencharts dependency (required by biojava)
-    maven {
-        url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
-    }
 }
 
 dependencies {
diff --git a/mGAP/build.gradle b/mGAP/build.gradle
index f024fb888..afe2342fc 100644
--- a/mGAP/build.gradle
+++ b/mGAP/build.gradle
@@ -3,10 +3,6 @@ import org.labkey.gradle.util.ExternalDependency
 
 repositories {
     mavenCentral()
-    // Added for opencharts dependency (required by biojava)
-    maven {
-        url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
-    }
 }
 
 dependencies {
diff --git a/primeseq/build.gradle b/primeseq/build.gradle
index e8cab2b61..1a8b44122 100644
--- a/primeseq/build.gradle
+++ b/primeseq/build.gradle
@@ -6,10 +6,6 @@ repositories {
     maven {
         url "https://clojars.org/repo"
     }
-    // Added for opencharts dependency (required by biojava)
-    maven {
-        url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
-    }
 }
 
 dependencies {
diff --git a/tcrdb/build.gradle b/tcrdb/build.gradle
index 77fd38aef..0afa638f6 100644
--- a/tcrdb/build.gradle
+++ b/tcrdb/build.gradle
@@ -7,10 +7,6 @@ repositories {
    maven {
       url "https://clojars.org/repo"
    }
-   // Added for opencharts dependency (required by biojava)
-   maven {
-      url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
-   }
 }
 
 dependencies {
diff --git a/variantdb/build.gradle b/variantdb/build.gradle
index 198e90dc1..a36b556f5 100644
--- a/variantdb/build.gradle
+++ b/variantdb/build.gradle
@@ -1,14 +1,6 @@
 import org.labkey.gradle.util.BuildUtils
 import org.labkey.gradle.util.ExternalDependency
 
-repositories {
-      mavenCentral()
-      // Added for opencharts dependency (required by biojava)
-      maven {
-            url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
-      }
-}
-
 repositories {
       mavenCentral()
       // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk