From d3eccadeded50c4c9ac7b7431dd07401c4d30f46 Mon Sep 17 00:00:00 2001 From: bbimber Date: Mon, 19 Jun 2023 06:21:12 -0700 Subject: [PATCH 1/2] Improve MCC test --- mcc/test/src/org/labkey/test/tests/mcc/MccTest.java | 1 + 1 file changed, 1 insertion(+) diff --git a/mcc/test/src/org/labkey/test/tests/mcc/MccTest.java b/mcc/test/src/org/labkey/test/tests/mcc/MccTest.java index 9e7d5342d..f3cf91033 100644 --- a/mcc/test/src/org/labkey/test/tests/mcc/MccTest.java +++ b/mcc/test/src/org/labkey/test/tests/mcc/MccTest.java @@ -107,6 +107,7 @@ private void testAnimalImportAndTransfer() throws Exception Ext4FieldRef.getForLabel(this, "Effective Date").setValue(new SimpleDateFormat("MM/dd/yyyy").format(new Date())); Ext4ComboRef combo = Ext4ComboRef.getForLabel(this, "Destination Center Name"); combo.clickTrigger(); + combo.waitForStoreLoad(); waitAndClick(Locator.tagContainingText("li", "Other")); Window dialog = new Window.WindowFinder(getDriver()).withTitle("Enter Value").waitFor(); From b2a5ccd99cbe2e5cc95e1faab7b01ff3c9b2ddb5 Mon Sep 17 00:00:00 2001 From: bbimber Date: Mon, 19 Jun 2023 09:28:10 -0700 Subject: [PATCH 2/2] Correct SnpSift args --- mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java b/mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java index 4944aa9ee..1057086d1 100644 --- a/mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java +++ b/mGAP/src/org/labkey/mgap/pipeline/SnpSiftWrapper.java @@ -32,12 +32,11 @@ public void runSnpSift(File dbnsfpFile, File input, File output) throws Pipeline params.addAll(SequencePipelineService.get().getJavaOpts()); params.add("-jar"); params.add(getSnpSiftJar().getPath()); - params.add("dbnsfp"); + params.add("DbNsfp"); params.add("-db"); params.add(dbnsfpFile.getPath()); - params.add("-noStats"); - params.add("-nodownload"); + params.add("-noDownload"); params.add(input.getPath());