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raw2features Public Forked from CraigMyles/raw2features

OME-Zarr whole-slide images to patch- and slide-level foundation-model embeddings - cloud-native, FAIR, model- and backend-agnostic.

Jupyter Notebook 0MIT 2 0 1 Updated Jul 22, 2026

omeZarrProcessingDemo Public

Reads OME-Zarr image, computes threshold and stores as a label map. Lazy/Dask. ome-zarr-py and ngff-zarr variants.

Python 0MIT 0 0 0 Updated Jul 17, 2026

tissue-map-tools Public Forked from hms-dbmi/tissue-map-tools

NGFF/ST and Neuroglancer Precomputed, visualisable in Vitessce

Python 0BSD-3-Clause 4 0 0 Updated May 15, 2026

Aida3Dpreprocessing Public

Collection of scripts to prepare data for display in legacy AIDA-3D viewer

Python 0MIT 0 8 1 Updated Apr 30, 2026

AIDA-3D-OMAL Public Forked from alanaberdeen/AIDA-3D

AIDA-3D fork for OMAL

TypeScript 0MIT 2 4 1 Updated Apr 24, 2026

napari-sam3-assistant Public Forked from wulinteousa2-hash/napari-sam3-assistant

A napari plugin for interactive Segment Anything Model 3 (SAM3) segmentation using text, points, boxes, exemplar prompts, point-based refinement, and 3D/video-like propagation

Python 0MIT 1 0 0 Updated Apr 20, 2026

AIDA-3D Public Forked from alanaberdeen/AIDA-3D

Prototype 3D viewer for AIDA

TypeScript 2MIT 2 36 2 Updated Jan 21, 2026

simple-server Public

Simple webserver in python

Python 0MIT 0 0 0 Updated Jan 16, 2026

python-bioformats-omal Public Forked from CellProfiler/python-bioformats

Read and write life sciences file formats - modifications for OMAL

Python 0 47 0 0 Updated Dec 11, 2025

ImageFormattingTools Public

Python 0AGPL-3.0 0 0 0 Updated Nov 5, 2025

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