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cmake build - #17

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gf712 wants to merge 9 commits into
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cmake build#17
gf712 wants to merge 9 commits into
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gf712:master

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@gf712

@gf712gf712 commented Feb 9, 2018•
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I wrote CMakeList.txt files that use cmake to generate Makefiles.
This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.

So to build bioplib, it would be something like this:

mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.
The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.
(I also moved the test directory to the project directory to make it easier to find..)

I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!

Gil added 9 commits February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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@gf712
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try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

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I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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@gf712

, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

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I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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@gf712

, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

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I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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@gf712

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

Loading

Copy link


Copy Markdown

I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
Sign up for freeto join this conversation on GitHub.
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@gf712

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
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observer.observe(document.body, { childList: true, subtree: true });
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} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

Loading

Copy link


Copy Markdown

I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
Sign up for freeto join this conversation on GitHub.
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@gf712

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
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function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
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})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
Skip to content
cmake build - #17
Open
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Conversation
@gf712
@gf712gf712
commented
Feb 9, 2018•

edited

Loading

Copy link


Copy Markdown

I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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1 participant

@gf712

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
// Create style element if it doesn't exist
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if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
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style.textContent = '
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html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
}
/* Restore images, videos, iframes, canvas */
img, video, iframe, canvas, svg, picture, [style*="background-image"] {
filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
}
/* Scrollbars */
::-webkit-scrollbar { background: #1a1a2e !important; }
::-webkit-scrollbar-thumb { background: #444 !important; }
::-webkit-scrollbar-thumb:hover { background: #555 !important; }
/* Selection */
::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
';
}
function removeDarkMode() {
var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
}
// Toggle with Alt+Shift+D
document.addEventListener('keydown', function(e) {
if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
console.log('[Universal Dark Mode] Enabled');
} else {
removeDarkMode();
console.log('[Universal Dark Mode] Disabled');
}
}
});
// Apply on load
applyDarkMode();
// Re-apply on dynamic content
var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
cmake build by gf712 · Pull Request #17 · ACRMGroup/bioplib · GitHub
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cmake build - #17
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gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
Open
cmake build#17
gf712 wants to merge 9 commits into
ACRMGroup:masterfrom 
gf712:master
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@gf712
@gf712gf712
commented
Feb 9, 2018•

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I wrote CMakeList.txt files that use cmake to generate Makefiles.

This makes it easier for any user to write to install and has the same behaviour as the current Makefiles. The main advantage is that it looks for dependencies and adds the corresponding libraries.
So to build bioplib, it would be something like this:
mkdir build
cd build/
cmake .. <- this generates the makefiles, and any path variable can be set here, like Makefiles just add -DVariableName, i.e. -DDEST='path/to/folder/' to set install directory
make
make install
make test <- run tests directly from project build directory

Note that all other original make recipies are included in the CMakeList.txt, e.g. make shared.

The root CMakeList.txt file also calls another CMakeList.txt file in the test/ directory which builds the test files.

(I also moved the test directory to the project directory to make it easier to find..)
I hope this is helpful, as I found it really convenient to install bioplib this way on my machine and I am working on something similar with bioptools!
Gil
added 9 commits
February 9, 2018 16:36
Gil
changed directory of tests
fc0bd5f
also changed the tests:
- tmp directory might only be accessible with sudo rights in some systems causing tests to fail
Gil
removed relative path
cc00091
Gil
moved makefile to new test directory
28cb59e
Gil
i think this is a bug!
1a65f35
- it does not make sense to check if boolean is less than 0 -> ABS(pdb->formal_charge <= 8)
- this is probably meant to be ABS(pdb->formal_charge) <= 8)
Gil
cmake files!
2157a7c
Gil
Merge branch 'master' ofhttps://github.com/gf712/bioplib
8c3b86f
Gil
fixed library names
3e493f4
Gil
find check library
ae88541
Gil
build shared library by default and add symlinks
c67bbaf
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@gf712