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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
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AHuffmyer/README.md

Ariana S. Huffmyer, PhD

Research Scientist, University of Washington

I am a research scientist studying the effects of climate change on marine invertebrate physiology and early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.

I use open lab notebooks and GitHub to make data and code openly accessible.

View my CV, Google Scholar page, and other links on my LinkTree here

BusinessCard

Pinned Loading

  1. EarlyLifeHistory_EnergeticsEarlyLifeHistory_EnergeticsPublic

    Ontogenetic shifts in symbiotic and metabolic state in coral early life history

    HTML 8 2

  2. SymbioticIntegrationSymbioticIntegrationPublic

    Symbiotic nutritional exchange in coral larvae under thermal stress

    1

  3. larval_symbiont_TPClarval_symbiont_TPCPublic

    Study on the effects of symbiont community identity on Montipora capitata coral larval thermal performance in Hawaii in summer 2023

    HTML

  4. moorea_symbiotic_exchange_2023moorea_symbiotic_exchange_2023Public

    Adult and juvenile symbiotic nutritional exchange study in Moorea in 2023

    HTML

  5. ASH_Putnam_Lab_NotebookASH_Putnam_Lab_NotebookPublic

    Forked from hputnam/Putnam_Lab_Notebook

    Open Lab Notebook

    SCSS 2

  6. urol-e5/timeseriesurol-e5/timeseriesPublic

    Data generated from e5 time series sampling in Moorea

    R 4