Variant annotation and filtration server ALAPY Genome Explorer (AGx)

Standalone server for VCF files annotated with RefSeq, dbSNP, ExAC, ClinVar, 1000 genomes, HGNC, ESP6500, predicted consequences, SIFT, PolyPhen

• Supports modern browsers on computers, tablets and smartphones

• Current GUI supports limited analysis functionality that now includes flexible filters and inheritance models with tumor/normal and trio analysis and two column sorting

• GUI supports history and versioning of your filters, models, analyses and views,

• You can exports results into sql, txt and csv formats of selected variants.

• It is free for academic use. Please read EULA here.

Installation

• We provide installation scripts for Linux systems here.
• We provide installation wiki here.

Running

• We provide scripts needed to start the server and add users on Linux systems here.

Usage

• Please refer to our FAQ here and tutorials on ALAPY YouTube channel.

Please tell us what you think and how we can make it better.