BIAS Lab - Bioinformatics and Experimental Algorithms lab

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1. sharksharkPublic

   Mapping-free software for fishing relevant reads in an RNA-Seq sample

   C++ 19 1

2. LightStringGraphLightStringGraphPublic

   Lightweight String Graph Construction

   C++ 11 1

3. galiggaligPublic

   A graph aligner

   Python 31 13

4. HapCHATHapCHATPublic

   Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

   C++ 13 7

5. gppfgppfPublic

   General Parsimony Phylogeny models from Frequencies

   Python 2 1

6. PIntronPIntronPublic

   A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

   C 5 6