Allen Institute for Cell Science

aicsimageio Public archive

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Python 222 51 2 0 Updated Dec 1, 2025

aics_dask_utils Public archive

Utility functions commonly used by AICS projects for interacting with Dask

Python 1 0 2 0 Updated Dec 1, 2025

cell-tracker-gnn Public archive Forked from talbenha/cell-tracker-gnn

[ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos

Python 1 12 0 0 Updated Dec 1, 2025

crossmodal Public archive

Cross modal analysis of RNA seq and images

Python 0 0 4 0 Updated Dec 1, 2025

mti_nma Public archive

Normal mode analysis worflow

Python 0 0 3 1 Updated Nov 17, 2025

docker_pytorch_extended Public archive Forked from gregjohnso/docker_pytorch_extended

Uses the pytorch docker image to build an extended image with jupyter notebook, and some other python utils

Dockerfile 2 6 5 0 Updated Nov 17, 2025

cookiecutter-pypackage Public archive

A cookiecutter template to generate a new Python package.

Python 23MIT 7 1 0 Updated Nov 17, 2025

nvidia-docker-stats Public archive

Monitor nvidia gpu unit load associated with docker spawned processes

Python 29GPL-3.0 13 1 2 Updated Nov 17, 2025

quilt3distribute Public archive

People commonly work with tabular datasets, people want to share their data, this makes that easier through Quilt3.

Python 5 1 6 0 Updated Nov 17, 2025

czifile Public archive

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

Jupyter Notebook 14BSD-3-Clause 7 3 1 Updated Oct 15, 2025

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