When I add a MCP server in altimate code that uses an environment variable in the configuration it fails to use it. In the tool itself I can see that it can succesfully connect:

Metadata
| Field | Value |
|---|
| CLI Version | 0.5.17 |
| Platform | darwin |
| Architecture | arm64 |
| OS Release | 25.3.0 |
| Category | bug |
| Working Directory | data-warehouse-etl-dbt |
| Session ID | ses_2aba8ca90ffeLGmZEZ4sNP90Ng |
When I add a MCP server in altimate code that uses an environment variable in the configuration it fails to use it. In the tool itself I can see that it can succesfully connect:
Metadata