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secapr clean_reads and secapr assemble_reads stall

Status: Open.

#41In AntonelliLab/seqcap_processor;

· faustovrz opened on Apr 2, 2025

locus_selection

Status: Open.

#39In AntonelliLab/seqcap_processor;

· pabijanM opened on Mar 12, 2024

--min-coverage in find_target_contigs

Status: Open.

#38In AntonelliLab/seqcap_processor;

· pabijanM opened on Nov 11, 2023

Problem with loci alignments

Status: Open.

#35In AntonelliLab/seqcap_processor;

· PierreHenriFabre opened on Jan 9, 2023

FileExistsError: [Errno 17] File exists: '/home/gmeng/work/4.assembly/secapr/April-5-2022/stats'

Status: Open.

#27In AntonelliLab/seqcap_processor;

· linzhi2013 opened on Apr 5, 2022

ValueError: No objects to concatenate

Status: Open.

#26In AntonelliLab/seqcap_processor;

· linzhi2013 opened on Apr 5, 2022

Paralogs_to_ref

Status: Open.

#25In AntonelliLab/seqcap_processor;

· EdBiff opened on Mar 22, 2022

GC overhead limit exceeded

Status: Open.

#24In AntonelliLab/seqcap_processor;

· MikeSanJose opened on Mar 17, 2022

Division by zero error on aDNA dataset

Status: Open.

#23In AntonelliLab/seqcap_processor;

· ThibauldMichel opened on May 9, 2021

KeyError in locus_selection.py

Status: Open.

#22In AntonelliLab/seqcap_processor;

· ThibauldMichel opened on May 4, 2021

--disable_stats missing?

Status: Open.

#20In AntonelliLab/seqcap_processor;

· BenKuhnhaeuser opened on Nov 5, 2020

Good loci lost during phasing

Status: Open.

#17In AntonelliLab/seqcap_processor;

· brunoasm opened on Oct 16, 2019