Arc Research Institute

A command line utilty for working with BINSEQ files

A high efficiency binary format for sequencing data

A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

Comprehensive suite for evaluating perturbation prediction models

Data analysis for the scBaseCount manuscript

Nextflow pipeline to re-process all public single-cell RNA-seq data

LLM agents for working with the SRA and associated bioinformatics databases.

State is a machine learning model that predicts cellular perturbation response across diverse contexts

pytorch dataloaders for single-cell perturbation data

A systematic evaluation framework for benchmarking the degree of concordance between biological conclusions inferred from simulated perturbation datasets and those derived from real experimental observations.