Baranzini Lab UCSF

Foundational AI Platform for Biomedical Research Allowing Agents built by the Community

An MCP server that integrates electronic health record databases and a large-scale heterogeneous knowledge graph for rapid clinical record query and fast biomedical knowledge inference.

Metabolic Risk Score for Gastric Bypass Surgery Patients

Public human- and machine-readable documentation for node/edge types in the SPOKE knowledge graph

BioRouter skills collection

MCP router for provenance-first public database lookups across biomedical, chemistry, materials, literature, regulatory, patent, and scientific data APIs.

MCP adapter for Rowan-style cloud molecular modeling: conformers, pKa, docking, analogue docking, cofolding, and medicinal chemistry calculation provenance.

MCP adapter for Tamarind Bio-style cloud protein, structure, docking, and design workflows with guarded API calls and result provenance.

MCP adapter for scientific web and deep-research workflows, web search APIs, source fetching, and provenance capture beyond scholarly APIs.

MCP adapter for structured paper and full-text metadata search across scholarly APIs, section-aware evidence extraction, and provenance-first literature queries.