BesenbacherLab

Ultra-fast command line tools for extracting bias-corrected fragmentation patterns from cell-free DNA

LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.

Personlig Medicin Data Science kursus 2025

A mutation-informed fragmentomics exploration framework for cfDNA

Detect somatic SNVs from deep targeted UMI-seq cfDNA

Snakemake workflow and codebase for ctDNA detection with k-mers

pytorch implementation of NMF extentions that incorporate batch effects including Batch NMF (bNMF) and Sigmoid Filter NMF (sfNMF).

Snakemake workflow and codebase for the ContextCountBooster package

Sequence context count modeling with weights using xgboost

A somatic SNV variant caller that uses discordant overlapping read pairs to calculate sample-specific base error rates.