Alkan Lab for Bioinformatics and Computational Genomics

Implementation of LCP in C

Alkan Lab website

A container-base, modular workflow for rapid pathogen identification and antimicrobial‑resistance (AMR) profiling from long‑read sequencing data, geared toward sepsis diagnostics.

GenCore utilizes the innovative Locally Consistent Parsing (LCP) algorithm for precise genomic comparisons, supporting .fastq and .fasta files. Implemented in C for high performance on large datasets

RepeatNet: an ab initio centromeric sequence detection algorithm

Pattern matching tool to detect block rearrangement events in genomic sequences

CS481/583 Course Web Page

Variation Graph Construction using Locally Consistent Parsing