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Compatibility with scanpy ecosystem in python

Status: Open.

#61In BiocPy/spatialexperiment;

· linjing-lab opened on Apr 15, 2026

Multiple names for image_data's column: can be either scale_factor or scaleFactor

Status: Open.

#52In BiocPy/spatialexperiment;

· jkanche opened on May 14, 2025

spelling out methods names

enhancementNew feature or requestNew feature or request

Status: Open.

#47In BiocPy/spatialexperiment;

· jkanche opened on Apr 24, 2025

implement to_anndata()

Status: Open.

#44In BiocPy/spatialexperiment;

· keviny2 opened on Apr 23, 2025

Implement rotate_img() in SpatialExperiment class

Status: Open.

#43In BiocPy/spatialexperiment;

· keviny2 opened on Apr 16, 2025

getters and setters for SpatialImage properties

Status: Open.

#39In BiocPy/spatialexperiment;

· keviny2 opened on Apr 4, 2025

tidy up printing spatial coords

Status: Open.

#29In BiocPy/spatialexperiment;

· keviny2 opened on Feb 26, 2025

combine row ops

Status: Open.

#28In BiocPy/spatialexperiment;

· keviny2 opened on Feb 26, 2025

enable updates to sample_id

Status: Open.

#25In BiocPy/spatialexperiment;

· keviny2 opened on Feb 24, 2025

SPE-rotate-mirror (methods for spatial attributes)

Status: Open.

#20In BiocPy/spatialexperiment;

· keviny2 opened on Feb 8, 2025

imgData methods

Status: Open.

#19In BiocPy/spatialexperiment;

· keviny2 opened on Feb 8, 2025

interop w/ SpatialData

Status: Open.

#17In BiocPy/spatialexperiment;

· keviny2 opened on Feb 4, 2025