BradhamLab

Motif Finder pipeline - searching for motifs through orthologous species.

Python 0AGPL-3.0 0 0 0 Updated Aug 13, 2026

Code for the DE and enricment analysis for the paper entitled Alizarin Red perturbs skeletal patterning and biomineralization via Catalase inhibition.

R 0 0 0 0 Updated Jun 25, 2024

sslouvain Public

Forked from https://github.com/vtraag/louvain-igraph

C++ 2GPL-3.0 0 0 0 Updated Jun 13, 2024

ethanol_2022 Public

Pipeline to analyze RNAseq data from Rodriguez-Sastre 2022

R 0 1 0 1 Updated Mar 11, 2024

scPipe Public

Pipeline for scRNAseq read alignment

Python 0Apache-2.0 0 17 0 Updated Feb 7, 2024

icat Public

Identifying Cell-states Across Treatments

Python 5BSD-3-Clause 2 1 0 Updated Oct 19, 2023

dbd_comparison Public

repository for comparing DNA Binding Sites for motif selection

Python 0 0 0 0 Updated Jun 7, 2023

indrops-star Public

Pipeline to analyze Indrops V3 data using STARsolo

Python 1BSD-3-Clause 0 1 0 Updated Jun 6, 2023

pmc_detection Public

Workflow for detecting PMCs in confocal images

Python 0BSD-3-Clause 0 9 0 Updated May 31, 2023

lvar3_extract Public

Extract desired sequences from the Lvar3.0 genome

Python 0 1 6 0 Updated Feb 10, 2023

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