Dependency Dashboard #208

Open
Open
Dependency Dashboard#208
Labels
dependenciesPull requests that update a dependency file

Description

@renovate
renovate
bot
opened on Nov 24, 2025

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
View this repository on the Mend.io Web Portal.

Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

View abandoned dependencies (7)

[!NOTE]
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

DatasourcePackageLast Updated
github-actionshmarr/auto-approve-action2024-02-03
pep621art2025-04-12
pep621dask-jobqueue2024-08-22
pep621pytest-sugar2025-08-23
pep621sphinx-copybutton2023-04-14
pep621sphinxcontrib-contentui2020-04-18
pep621sphinxcontrib-details-directive2019-09-22

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

  • Update softprops/action-gh-release action to v3.0.3
  • Update dependency distributed to >=2026.8.0,<2026.9.0
  • Lock file maintenance
  • 🔐 Create all awaiting schedule PRs at once 🔐

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

Detected Dependencies

github-actions (8)
.github/workflows/coveralls-main.yaml (2)
  • ubuntu 24.04
  • python 3.14
.github/workflows/daily.yaml (2)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
.github/workflows/pr.yaml (12)
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • ubuntu 24.04
  • python 3.14
  • ubuntu 24.04
  • python 3.14
  • ubuntu 24.04
  • python 3.14
  • ubuntu 24.04
  • python 3.14
  • ubuntu 24.04
  • python 3.14
.github/workflows/release.yaml (19)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
  • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
  • ubuntu 24.04
  • python 3.14.6 → [Updates: 3.14.7]
  • ubuntu 24.04
  • ubuntu 24.04
  • ubuntu 24.04
  • ubuntu 24.04
  • python 3.14.6 → [Updates: 3.14.7]
  • ubuntu 24.04
.github/workflows/update_regression_baselines.yaml (5)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
  • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
  • ubuntu 24.04
  • python 3.14
.github/workflows/update-copyright-years-in-license-file.yaml (2)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
.github/workflows/weekly-docs.yaml (3)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
.github/workflows/weekly-regression.yaml (5)
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • ubuntu 24.04
  • python 3.14
  • ubuntu 24.04
  • python 3.14
pep621 (1)
pyproject.toml (34)
  • python >=3.12
  • numpy >=2.3,<3.0
  • mdanalysis >=2.10,<3.0
  • pandas >=3,<3.1
  • psutil >=7.1,<8.0
  • PyYAML >=6.0,<7.0
  • python-json-logger >=4.0,<5.0
  • rich >=15,<15.1
  • art >=6.5,<7.0
  • networkx >=3.6,<3.7
  • matplotlib >=3.11,<3.12
  • waterEntropy >=2,<2.3
  • requests >=2.32,<3.0
  • rdkit >=2025.9.5
  • numba >=0.65.1,<0.70
  • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
  • dask-jobqueue >=0.9.0,<0.10
  • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
  • pytest >=9.0,<10.0
  • pytest-cov >=7.0,<8.0
  • pytest-sugar >=1.1,<2.0
  • pre-commit >=4.5,<5.0
  • ruff >=0.16,<0.17
  • pylint >=4.0,<5.0
  • rstcheck >=6.2,<7.0
  • sphinx >=9.1,<9.2
  • nbsphinx >=0.9,<1.0
  • sphinx-rtd-theme >=3,<3.2
  • sphinxcontrib-contentui >=0.2,<1.0
  • sphinxcontrib-details-directive >=0.1,<1.0
  • sphinx-copybutton >=0.5,<1.0
  • furo >=2025.0,<2026.0
  • markupsafe >=3.0,<4.0
  • flit_core >=4,<5
  • Check this box to trigger a request for Renovate to run again on this repository

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    Labels

    dependenciesPull requests that update a dependency file

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    Projects

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      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions

      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
       blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

      Skip to content
      Dependency Dashboard #208
      Open
      Open
      Dependency Dashboard#208
      Labels
      dependenciesPull requests that update a dependency file
      Description
      @renovate
      renovate
      bot
      opened on Nov 24, 2025
      This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
      View this repository on the Mend.io Web Portal.
      Abandoned Dependencies
      The following dependencies have not received updates for an extended period and may be unmaintained.
      View abandoned dependencies (7)
      [!NOTE]
      
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
      DatasourcePackageLast Updated
      github-actionshmarr/auto-approve-action2024-02-03
      pep621art2025-04-12
      pep621dask-jobqueue2024-08-22
      pep621pytest-sugar2025-08-23
      pep621sphinx-copybutton2023-04-14
      pep621sphinxcontrib-contentui2020-04-18
      pep621sphinxcontrib-details-directive2019-09-22
      Awaiting Schedule
      The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
      •  Update softprops/action-gh-release action to v3.0.3
      •  Update dependency distributed to >=2026.8.0,<2026.9.0
      •  Lock file maintenance
      •  🔐 Create all awaiting schedule PRs at once 🔐
      Open
      The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
      Detected Dependencies
      github-actions (8)
      .github/workflows/coveralls-main.yaml (2)
      • ubuntu 24.04
      • python 3.14
      .github/workflows/daily.yaml (2)
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
      .github/workflows/pr.yaml (12)
      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
      • ubuntu 24.04
      • python 3.14
      • ubuntu 24.04
      • python 3.14
      • ubuntu 24.04
      • python 3.14
      • ubuntu 24.04
      • python 3.14
      • ubuntu 24.04
      • python 3.14
      .github/workflows/release.yaml (19)
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
      • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
      • ubuntu 24.04
      • python 3.14.6 → [Updates: 3.14.7]
      • ubuntu 24.04
      • ubuntu 24.04
      • ubuntu 24.04
      • ubuntu 24.04
      • python 3.14.6 → [Updates: 3.14.7]
      • ubuntu 24.04
      .github/workflows/update_regression_baselines.yaml (5)
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
      • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
      • ubuntu 24.04
      • python 3.14
      .github/workflows/update-copyright-years-in-license-file.yaml (2)
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
      .github/workflows/weekly-docs.yaml (3)
      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
      .github/workflows/weekly-regression.yaml (5)
      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
      • ubuntu 24.04
      • python 3.14
      • ubuntu 24.04
      • python 3.14
      pep621 (1)
      pyproject.toml (34)
      • python >=3.12
      • numpy >=2.3,<3.0
      • mdanalysis >=2.10,<3.0
      • pandas >=3,<3.1
      • psutil >=7.1,<8.0
      • PyYAML >=6.0,<7.0
      • python-json-logger >=4.0,<5.0
      • rich >=15,<15.1
      • art >=6.5,<7.0
      • networkx >=3.6,<3.7
      • matplotlib >=3.11,<3.12
      • waterEntropy >=2,<2.3
      • requests >=2.32,<3.0
      • rdkit >=2025.9.5
      • numba >=0.65.1,<0.70
      • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
      • dask-jobqueue >=0.9.0,<0.10
      • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
      • pytest >=9.0,<10.0
      • pytest-cov >=7.0,<8.0
      • pytest-sugar >=1.1,<2.0
      • pre-commit >=4.5,<5.0
      • ruff >=0.16,<0.17
      • pylint >=4.0,<5.0
      • rstcheck >=6.2,<7.0
      • sphinx >=9.1,<9.2
      • nbsphinx >=0.9,<1.0
      • sphinx-rtd-theme >=3,<3.2
      • sphinxcontrib-contentui >=0.2,<1.0
      • sphinxcontrib-details-directive >=0.1,<1.0
      • sphinx-copybutton >=0.5,<1.0
      • furo >=2025.0,<2026.0
      • markupsafe >=3.0,<4.0
      • flit_core >=4,<5
      •  Check this box to trigger a request for Renovate to run again on this repository
      Metadata
      Metadata
      Assignees
      No one assigned
        Labels
        dependenciesPull requests that update a dependency file
        Type
        No type
        Projects
        No projects
          Milestone
          No milestone
          Relationships
          None yet
          Development
          No branches or pull requests
          Issue actions
          
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

          Skip to content
          Dependency Dashboard #208
          Open
          Open
          Dependency Dashboard#208
          Labels
          dependenciesPull requests that update a dependency file
          Description
          @renovate
          renovate
          bot
          opened on Nov 24, 2025
          This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
          View this repository on the Mend.io Web Portal.
          Abandoned Dependencies
          The following dependencies have not received updates for an extended period and may be unmaintained.
          View abandoned dependencies (7)
          [!NOTE]
          
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
          DatasourcePackageLast Updated
          github-actionshmarr/auto-approve-action2024-02-03
          pep621art2025-04-12
          pep621dask-jobqueue2024-08-22
          pep621pytest-sugar2025-08-23
          pep621sphinx-copybutton2023-04-14
          pep621sphinxcontrib-contentui2020-04-18
          pep621sphinxcontrib-details-directive2019-09-22
          Awaiting Schedule
          The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
          •  Update softprops/action-gh-release action to v3.0.3
          •  Update dependency distributed to >=2026.8.0,<2026.9.0
          •  Lock file maintenance
          •  🔐 Create all awaiting schedule PRs at once 🔐
          Open
          The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
          Detected Dependencies
          github-actions (8)
          .github/workflows/coveralls-main.yaml (2)
          • ubuntu 24.04
          • python 3.14
          .github/workflows/daily.yaml (2)
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
          .github/workflows/pr.yaml (12)
          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
          • ubuntu 24.04
          • python 3.14
          • ubuntu 24.04
          • python 3.14
          • ubuntu 24.04
          • python 3.14
          • ubuntu 24.04
          • python 3.14
          • ubuntu 24.04
          • python 3.14
          .github/workflows/release.yaml (19)
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
          • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
          • ubuntu 24.04
          • python 3.14.6 → [Updates: 3.14.7]
          • ubuntu 24.04
          • ubuntu 24.04
          • ubuntu 24.04
          • ubuntu 24.04
          • python 3.14.6 → [Updates: 3.14.7]
          • ubuntu 24.04
          .github/workflows/update_regression_baselines.yaml (5)
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
          • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
          • ubuntu 24.04
          • python 3.14
          .github/workflows/update-copyright-years-in-license-file.yaml (2)
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
          .github/workflows/weekly-docs.yaml (3)
          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
          .github/workflows/weekly-regression.yaml (5)
          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
          • ubuntu 24.04
          • python 3.14
          • ubuntu 24.04
          • python 3.14
          pep621 (1)
          pyproject.toml (34)
          • python >=3.12
          • numpy >=2.3,<3.0
          • mdanalysis >=2.10,<3.0
          • pandas >=3,<3.1
          • psutil >=7.1,<8.0
          • PyYAML >=6.0,<7.0
          • python-json-logger >=4.0,<5.0
          • rich >=15,<15.1
          • art >=6.5,<7.0
          • networkx >=3.6,<3.7
          • matplotlib >=3.11,<3.12
          • waterEntropy >=2,<2.3
          • requests >=2.32,<3.0
          • rdkit >=2025.9.5
          • numba >=0.65.1,<0.70
          • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
          • dask-jobqueue >=0.9.0,<0.10
          • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
          • pytest >=9.0,<10.0
          • pytest-cov >=7.0,<8.0
          • pytest-sugar >=1.1,<2.0
          • pre-commit >=4.5,<5.0
          • ruff >=0.16,<0.17
          • pylint >=4.0,<5.0
          • rstcheck >=6.2,<7.0
          • sphinx >=9.1,<9.2
          • nbsphinx >=0.9,<1.0
          • sphinx-rtd-theme >=3,<3.2
          • sphinxcontrib-contentui >=0.2,<1.0
          • sphinxcontrib-details-directive >=0.1,<1.0
          • sphinx-copybutton >=0.5,<1.0
          • furo >=2025.0,<2026.0
          • markupsafe >=3.0,<4.0
          • flit_core >=4,<5
          •  Check this box to trigger a request for Renovate to run again on this repository
          Metadata
          Metadata
          Assignees
          No one assigned
            Labels
            dependenciesPull requests that update a dependency file
            Type
            No type
            Projects
            No projects
              Milestone
              No milestone
              Relationships
              None yet
              Development
              No branches or pull requests
              Issue actions
              
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

              Skip to content
              Dependency Dashboard #208
              Open
              Open
              Dependency Dashboard#208
              Labels
              dependenciesPull requests that update a dependency file
              Description
              @renovate
              renovate
              bot
              opened on Nov 24, 2025
              This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
              View this repository on the Mend.io Web Portal.
              Abandoned Dependencies
              The following dependencies have not received updates for an extended period and may be unmaintained.
              View abandoned dependencies (7)
              [!NOTE]
              
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
              DatasourcePackageLast Updated
              github-actionshmarr/auto-approve-action2024-02-03
              pep621art2025-04-12
              pep621dask-jobqueue2024-08-22
              pep621pytest-sugar2025-08-23
              pep621sphinx-copybutton2023-04-14
              pep621sphinxcontrib-contentui2020-04-18
              pep621sphinxcontrib-details-directive2019-09-22
              Awaiting Schedule
              The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
              •  Update softprops/action-gh-release action to v3.0.3
              •  Update dependency distributed to >=2026.8.0,<2026.9.0
              •  Lock file maintenance
              •  🔐 Create all awaiting schedule PRs at once 🔐
              Open
              The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
              Detected Dependencies
              github-actions (8)
              .github/workflows/coveralls-main.yaml (2)
              • ubuntu 24.04
              • python 3.14
              .github/workflows/daily.yaml (2)
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
              .github/workflows/pr.yaml (12)
              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
              • ubuntu 24.04
              • python 3.14
              • ubuntu 24.04
              • python 3.14
              • ubuntu 24.04
              • python 3.14
              • ubuntu 24.04
              • python 3.14
              • ubuntu 24.04
              • python 3.14
              .github/workflows/release.yaml (19)
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
              • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
              • ubuntu 24.04
              • python 3.14.6 → [Updates: 3.14.7]
              • ubuntu 24.04
              • ubuntu 24.04
              • ubuntu 24.04
              • ubuntu 24.04
              • python 3.14.6 → [Updates: 3.14.7]
              • ubuntu 24.04
              .github/workflows/update_regression_baselines.yaml (5)
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
              • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
              • ubuntu 24.04
              • python 3.14
              .github/workflows/update-copyright-years-in-license-file.yaml (2)
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
              .github/workflows/weekly-docs.yaml (3)
              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
              .github/workflows/weekly-regression.yaml (5)
              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
              • ubuntu 24.04
              • python 3.14
              • ubuntu 24.04
              • python 3.14
              pep621 (1)
              pyproject.toml (34)
              • python >=3.12
              • numpy >=2.3,<3.0
              • mdanalysis >=2.10,<3.0
              • pandas >=3,<3.1
              • psutil >=7.1,<8.0
              • PyYAML >=6.0,<7.0
              • python-json-logger >=4.0,<5.0
              • rich >=15,<15.1
              • art >=6.5,<7.0
              • networkx >=3.6,<3.7
              • matplotlib >=3.11,<3.12
              • waterEntropy >=2,<2.3
              • requests >=2.32,<3.0
              • rdkit >=2025.9.5
              • numba >=0.65.1,<0.70
              • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
              • dask-jobqueue >=0.9.0,<0.10
              • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
              • pytest >=9.0,<10.0
              • pytest-cov >=7.0,<8.0
              • pytest-sugar >=1.1,<2.0
              • pre-commit >=4.5,<5.0
              • ruff >=0.16,<0.17
              • pylint >=4.0,<5.0
              • rstcheck >=6.2,<7.0
              • sphinx >=9.1,<9.2
              • nbsphinx >=0.9,<1.0
              • sphinx-rtd-theme >=3,<3.2
              • sphinxcontrib-contentui >=0.2,<1.0
              • sphinxcontrib-details-directive >=0.1,<1.0
              • sphinx-copybutton >=0.5,<1.0
              • furo >=2025.0,<2026.0
              • markupsafe >=3.0,<4.0
              • flit_core >=4,<5
              •  Check this box to trigger a request for Renovate to run again on this repository
              Metadata
              Metadata
              Assignees
              No one assigned
                Labels
                dependenciesPull requests that update a dependency file
                Type
                No type
                Projects
                No projects
                  Milestone
                  No milestone
                  Relationships
                  None yet
                  Development
                  No branches or pull requests
                  Issue actions
                  
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

                  Skip to content
                  Dependency Dashboard #208
                  Open
                  Open
                  Dependency Dashboard#208
                  Labels
                  dependenciesPull requests that update a dependency file
                  Description
                  @renovate
                  renovate
                  bot
                  opened on Nov 24, 2025
                  This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
                  View this repository on the Mend.io Web Portal.
                  Abandoned Dependencies
                  The following dependencies have not received updates for an extended period and may be unmaintained.
                  View abandoned dependencies (7)
                  [!NOTE]
                  
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
                  DatasourcePackageLast Updated
                  github-actionshmarr/auto-approve-action2024-02-03
                  pep621art2025-04-12
                  pep621dask-jobqueue2024-08-22
                  pep621pytest-sugar2025-08-23
                  pep621sphinx-copybutton2023-04-14
                  pep621sphinxcontrib-contentui2020-04-18
                  pep621sphinxcontrib-details-directive2019-09-22
                  Awaiting Schedule
                  The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
                  •  Update softprops/action-gh-release action to v3.0.3
                  •  Update dependency distributed to >=2026.8.0,<2026.9.0
                  •  Lock file maintenance
                  •  🔐 Create all awaiting schedule PRs at once 🔐
                  Open
                  The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
                  Detected Dependencies
                  github-actions (8)
                  .github/workflows/coveralls-main.yaml (2)
                  • ubuntu 24.04
                  • python 3.14
                  .github/workflows/daily.yaml (2)
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                  .github/workflows/pr.yaml (12)
                  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                  • ubuntu 24.04
                  • python 3.14
                  • ubuntu 24.04
                  • python 3.14
                  • ubuntu 24.04
                  • python 3.14
                  • ubuntu 24.04
                  • python 3.14
                  • ubuntu 24.04
                  • python 3.14
                  .github/workflows/release.yaml (19)
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
                  • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
                  • ubuntu 24.04
                  • python 3.14.6 → [Updates: 3.14.7]
                  • ubuntu 24.04
                  • ubuntu 24.04
                  • ubuntu 24.04
                  • ubuntu 24.04
                  • python 3.14.6 → [Updates: 3.14.7]
                  • ubuntu 24.04
                  .github/workflows/update_regression_baselines.yaml (5)
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                  • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
                  • ubuntu 24.04
                  • python 3.14
                  .github/workflows/update-copyright-years-in-license-file.yaml (2)
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
                  .github/workflows/weekly-docs.yaml (3)
                  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                  • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                  .github/workflows/weekly-regression.yaml (5)
                  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                  • ubuntu 24.04
                  • python 3.14
                  • ubuntu 24.04
                  • python 3.14
                  pep621 (1)
                  pyproject.toml (34)
                  • python >=3.12
                  • numpy >=2.3,<3.0
                  • mdanalysis >=2.10,<3.0
                  • pandas >=3,<3.1
                  • psutil >=7.1,<8.0
                  • PyYAML >=6.0,<7.0
                  • python-json-logger >=4.0,<5.0
                  • rich >=15,<15.1
                  • art >=6.5,<7.0
                  • networkx >=3.6,<3.7
                  • matplotlib >=3.11,<3.12
                  • waterEntropy >=2,<2.3
                  • requests >=2.32,<3.0
                  • rdkit >=2025.9.5
                  • numba >=0.65.1,<0.70
                  • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                  • dask-jobqueue >=0.9.0,<0.10
                  • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                  • pytest >=9.0,<10.0
                  • pytest-cov >=7.0,<8.0
                  • pytest-sugar >=1.1,<2.0
                  • pre-commit >=4.5,<5.0
                  • ruff >=0.16,<0.17
                  • pylint >=4.0,<5.0
                  • rstcheck >=6.2,<7.0
                  • sphinx >=9.1,<9.2
                  • nbsphinx >=0.9,<1.0
                  • sphinx-rtd-theme >=3,<3.2
                  • sphinxcontrib-contentui >=0.2,<1.0
                  • sphinxcontrib-details-directive >=0.1,<1.0
                  • sphinx-copybutton >=0.5,<1.0
                  • furo >=2025.0,<2026.0
                  • markupsafe >=3.0,<4.0
                  • flit_core >=4,<5
                  •  Check this box to trigger a request for Renovate to run again on this repository
                  Metadata
                  Metadata
                  Assignees
                  No one assigned
                    Labels
                    dependenciesPull requests that update a dependency file
                    Type
                    No type
                    Projects
                    No projects
                      Milestone
                      No milestone
                      Relationships
                      None yet
                      Development
                      No branches or pull requests
                      Issue actions
                      
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

                      Skip to content
                      Dependency Dashboard #208
                      Open
                      Open
                      Dependency Dashboard#208
                      Labels
                      dependenciesPull requests that update a dependency file
                      Description
                      @renovate
                      renovate
                      bot
                      opened on Nov 24, 2025
                      This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
                      View this repository on the Mend.io Web Portal.
                      Abandoned Dependencies
                      The following dependencies have not received updates for an extended period and may be unmaintained.
                      View abandoned dependencies (7)
                      [!NOTE]
                      
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
                      DatasourcePackageLast Updated
                      github-actionshmarr/auto-approve-action2024-02-03
                      pep621art2025-04-12
                      pep621dask-jobqueue2024-08-22
                      pep621pytest-sugar2025-08-23
                      pep621sphinx-copybutton2023-04-14
                      pep621sphinxcontrib-contentui2020-04-18
                      pep621sphinxcontrib-details-directive2019-09-22
                      Awaiting Schedule
                      The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
                      •  Update softprops/action-gh-release action to v3.0.3
                      •  Update dependency distributed to >=2026.8.0,<2026.9.0
                      •  Lock file maintenance
                      •  🔐 Create all awaiting schedule PRs at once 🔐
                      Open
                      The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
                      Detected Dependencies
                      github-actions (8)
                      .github/workflows/coveralls-main.yaml (2)
                      • ubuntu 24.04
                      • python 3.14
                      .github/workflows/daily.yaml (2)
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                      .github/workflows/pr.yaml (12)
                      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                      • ubuntu 24.04
                      • python 3.14
                      • ubuntu 24.04
                      • python 3.14
                      • ubuntu 24.04
                      • python 3.14
                      • ubuntu 24.04
                      • python 3.14
                      • ubuntu 24.04
                      • python 3.14
                      .github/workflows/release.yaml (19)
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
                      • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
                      • ubuntu 24.04
                      • python 3.14.6 → [Updates: 3.14.7]
                      • ubuntu 24.04
                      • ubuntu 24.04
                      • ubuntu 24.04
                      • ubuntu 24.04
                      • python 3.14.6 → [Updates: 3.14.7]
                      • ubuntu 24.04
                      .github/workflows/update_regression_baselines.yaml (5)
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                      • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
                      • ubuntu 24.04
                      • python 3.14
                      .github/workflows/update-copyright-years-in-license-file.yaml (2)
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
                      .github/workflows/weekly-docs.yaml (3)
                      • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                      • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                      .github/workflows/weekly-regression.yaml (5)
                      • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                      • ubuntu 24.04
                      • python 3.14
                      • ubuntu 24.04
                      • python 3.14
                      pep621 (1)
                      pyproject.toml (34)
                      • python >=3.12
                      • numpy >=2.3,<3.0
                      • mdanalysis >=2.10,<3.0
                      • pandas >=3,<3.1
                      • psutil >=7.1,<8.0
                      • PyYAML >=6.0,<7.0
                      • python-json-logger >=4.0,<5.0
                      • rich >=15,<15.1
                      • art >=6.5,<7.0
                      • networkx >=3.6,<3.7
                      • matplotlib >=3.11,<3.12
                      • waterEntropy >=2,<2.3
                      • requests >=2.32,<3.0
                      • rdkit >=2025.9.5
                      • numba >=0.65.1,<0.70
                      • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                      • dask-jobqueue >=0.9.0,<0.10
                      • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                      • pytest >=9.0,<10.0
                      • pytest-cov >=7.0,<8.0
                      • pytest-sugar >=1.1,<2.0
                      • pre-commit >=4.5,<5.0
                      • ruff >=0.16,<0.17
                      • pylint >=4.0,<5.0
                      • rstcheck >=6.2,<7.0
                      • sphinx >=9.1,<9.2
                      • nbsphinx >=0.9,<1.0
                      • sphinx-rtd-theme >=3,<3.2
                      • sphinxcontrib-contentui >=0.2,<1.0
                      • sphinxcontrib-details-directive >=0.1,<1.0
                      • sphinx-copybutton >=0.5,<1.0
                      • furo >=2025.0,<2026.0
                      • markupsafe >=3.0,<4.0
                      • flit_core >=4,<5
                      •  Check this box to trigger a request for Renovate to run again on this repository
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                        dependenciesPull requests that update a dependency file
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                        Projects
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                          Milestone
                          No milestone
                          Relationships
                          None yet
                          Development
                          No branches or pull requests
                          Issue actions
                          
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

                          Skip to content
                          Dependency Dashboard #208
                          Open
                          Open
                          Dependency Dashboard#208
                          Labels
                          dependenciesPull requests that update a dependency file
                          Description
                          @renovate
                          renovate
                          bot
                          opened on Nov 24, 2025
                          This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
                          View this repository on the Mend.io Web Portal.
                          Abandoned Dependencies
                          The following dependencies have not received updates for an extended period and may be unmaintained.
                          View abandoned dependencies (7)
                          [!NOTE]
                          
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
                          DatasourcePackageLast Updated
                          github-actionshmarr/auto-approve-action2024-02-03
                          pep621art2025-04-12
                          pep621dask-jobqueue2024-08-22
                          pep621pytest-sugar2025-08-23
                          pep621sphinx-copybutton2023-04-14
                          pep621sphinxcontrib-contentui2020-04-18
                          pep621sphinxcontrib-details-directive2019-09-22
                          Awaiting Schedule
                          The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
                          •  Update softprops/action-gh-release action to v3.0.3
                          •  Update dependency distributed to >=2026.8.0,<2026.9.0
                          •  Lock file maintenance
                          •  🔐 Create all awaiting schedule PRs at once 🔐
                          Open
                          The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
                          Detected Dependencies
                          github-actions (8)
                          .github/workflows/coveralls-main.yaml (2)
                          • ubuntu 24.04
                          • python 3.14
                          .github/workflows/daily.yaml (2)
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                          .github/workflows/pr.yaml (12)
                          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                          • ubuntu 24.04
                          • python 3.14
                          • ubuntu 24.04
                          • python 3.14
                          • ubuntu 24.04
                          • python 3.14
                          • ubuntu 24.04
                          • python 3.14
                          • ubuntu 24.04
                          • python 3.14
                          .github/workflows/release.yaml (19)
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
                          • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
                          • ubuntu 24.04
                          • python 3.14.6 → [Updates: 3.14.7]
                          • ubuntu 24.04
                          • ubuntu 24.04
                          • ubuntu 24.04
                          • ubuntu 24.04
                          • python 3.14.6 → [Updates: 3.14.7]
                          • ubuntu 24.04
                          .github/workflows/update_regression_baselines.yaml (5)
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                          • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
                          • ubuntu 24.04
                          • python 3.14
                          .github/workflows/update-copyright-years-in-license-file.yaml (2)
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
                          .github/workflows/weekly-docs.yaml (3)
                          • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                          • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                          .github/workflows/weekly-regression.yaml (5)
                          • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                          • ubuntu 24.04
                          • python 3.14
                          • ubuntu 24.04
                          • python 3.14
                          pep621 (1)
                          pyproject.toml (34)
                          • python >=3.12
                          • numpy >=2.3,<3.0
                          • mdanalysis >=2.10,<3.0
                          • pandas >=3,<3.1
                          • psutil >=7.1,<8.0
                          • PyYAML >=6.0,<7.0
                          • python-json-logger >=4.0,<5.0
                          • rich >=15,<15.1
                          • art >=6.5,<7.0
                          • networkx >=3.6,<3.7
                          • matplotlib >=3.11,<3.12
                          • waterEntropy >=2,<2.3
                          • requests >=2.32,<3.0
                          • rdkit >=2025.9.5
                          • numba >=0.65.1,<0.70
                          • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                          • dask-jobqueue >=0.9.0,<0.10
                          • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                          • pytest >=9.0,<10.0
                          • pytest-cov >=7.0,<8.0
                          • pytest-sugar >=1.1,<2.0
                          • pre-commit >=4.5,<5.0
                          • ruff >=0.16,<0.17
                          • pylint >=4.0,<5.0
                          • rstcheck >=6.2,<7.0
                          • sphinx >=9.1,<9.2
                          • nbsphinx >=0.9,<1.0
                          • sphinx-rtd-theme >=3,<3.2
                          • sphinxcontrib-contentui >=0.2,<1.0
                          • sphinxcontrib-details-directive >=0.1,<1.0
                          • sphinx-copybutton >=0.5,<1.0
                          • furo >=2025.0,<2026.0
                          • markupsafe >=3.0,<4.0
                          • flit_core >=4,<5
                          •  Check this box to trigger a request for Renovate to run again on this repository
                          Metadata
                          Metadata
                          Assignees
                          No one assigned
                            Labels
                            dependenciesPull requests that update a dependency file
                            Type
                            No type
                            Projects
                            No projects
                              Milestone
                              No milestone
                              Relationships
                              None yet
                              Development
                              No branches or pull requests
                              Issue actions
                              
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

                              Skip to content
                              Dependency Dashboard #208
                              Open
                              Open
                              Dependency Dashboard#208
                              Labels
                              dependenciesPull requests that update a dependency file
                              Description
                              @renovate
                              renovate
                              bot
                              opened on Nov 24, 2025
                              This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
                              View this repository on the Mend.io Web Portal.
                              Abandoned Dependencies
                              The following dependencies have not received updates for an extended period and may be unmaintained.
                              View abandoned dependencies (7)
                              [!NOTE]
                              
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.
                              DatasourcePackageLast Updated
                              github-actionshmarr/auto-approve-action2024-02-03
                              pep621art2025-04-12
                              pep621dask-jobqueue2024-08-22
                              pep621pytest-sugar2025-08-23
                              pep621sphinx-copybutton2023-04-14
                              pep621sphinxcontrib-contentui2020-04-18
                              pep621sphinxcontrib-details-directive2019-09-22
                              Awaiting Schedule
                              The following updates are awaiting their schedule. To get an update now, click on a checkbox below.
                              •  Update softprops/action-gh-release action to v3.0.3
                              •  Update dependency distributed to >=2026.8.0,<2026.9.0
                              •  Lock file maintenance
                              •  🔐 Create all awaiting schedule PRs at once 🔐
                              Open
                              The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.
                              Detected Dependencies
                              github-actions (8)
                              .github/workflows/coveralls-main.yaml (2)
                              • ubuntu 24.04
                              • python 3.14
                              .github/workflows/daily.yaml (2)
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                              .github/workflows/pr.yaml (12)
                              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                              • ubuntu 24.04
                              • python 3.14
                              • ubuntu 24.04
                              • python 3.14
                              • ubuntu 24.04
                              • python 3.14
                              • ubuntu 24.04
                              • python 3.14
                              • ubuntu 24.04
                              • python 3.14
                              .github/workflows/release.yaml (19)
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
                              • hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • softprops/action-gh-release v3.0.2@3d0d9888cb7fd7b750713d6e236d1fcb99157228 → [Updates: v3.0.3]
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • conda-incubator/setup-miniconda v4@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
                              • ubuntu 24.04
                              • python 3.14.6 → [Updates: 3.14.7]
                              • ubuntu 24.04
                              • ubuntu 24.04
                              • ubuntu 24.04
                              • ubuntu 24.04
                              • python 3.14.6 → [Updates: 3.14.7]
                              • ubuntu 24.04
                              .github/workflows/update_regression_baselines.yaml (5)
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                              • stefanzweifel/git-auto-commit-action v7@4a55954c782fc1ea30b9056cd3e7a2b40ca8887d
                              • ubuntu 24.04
                              • python 3.14
                              .github/workflows/update-copyright-years-in-license-file.yaml (2)
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d
                              .github/workflows/weekly-docs.yaml (3)
                              • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
                              • actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
                              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                              .github/workflows/weekly-regression.yaml (5)
                              • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
                              • ubuntu 24.04
                              • python 3.14
                              • ubuntu 24.04
                              • python 3.14
                              pep621 (1)
                              pyproject.toml (34)
                              • python >=3.12
                              • numpy >=2.3,<3.0
                              • mdanalysis >=2.10,<3.0
                              • pandas >=3,<3.1
                              • psutil >=7.1,<8.0
                              • PyYAML >=6.0,<7.0
                              • python-json-logger >=4.0,<5.0
                              • rich >=15,<15.1
                              • art >=6.5,<7.0
                              • networkx >=3.6,<3.7
                              • matplotlib >=3.11,<3.12
                              • waterEntropy >=2,<2.3
                              • requests >=2.32,<3.0
                              • rdkit >=2025.9.5
                              • numba >=0.65.1,<0.70
                              • dask >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                              • dask-jobqueue >=0.9.0,<0.10
                              • distributed >=2026.1.2,<2026.2.0 → [Updates: >=2026.8.0,<2026.9.0]
                              • pytest >=9.0,<10.0
                              • pytest-cov >=7.0,<8.0
                              • pytest-sugar >=1.1,<2.0
                              • pre-commit >=4.5,<5.0
                              • ruff >=0.16,<0.17
                              • pylint >=4.0,<5.0
                              • rstcheck >=6.2,<7.0
                              • sphinx >=9.1,<9.2
                              • nbsphinx >=0.9,<1.0
                              • sphinx-rtd-theme >=3,<3.2
                              • sphinxcontrib-contentui >=0.2,<1.0
                              • sphinxcontrib-details-directive >=0.1,<1.0
                              • sphinx-copybutton >=0.5,<1.0
                              • furo >=2025.0,<2026.0
                              • markupsafe >=3.0,<4.0
                              • flit_core >=4,<5
                              •  Check this box to trigger a request for Renovate to run again on this repository
                              Metadata
                              Metadata
                              Assignees
                              No one assigned
                                Labels
                                dependenciesPull requests that update a dependency file
                                Type
                                No type
                                Projects
                                No projects
                                  Milestone
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