Center for Research in Biological Systems

CIL_Metadata_Forms Public

This app provides the metadata input forms for the CIL.

HTML 0MIT 0 0 0 Updated Sep 1, 2025

CIL_PHP_Website Public

Display data using Elasticsearch and utilize the bootstrap layout

HTML 7 3 47 1 Updated Jan 28, 2025

CIL_RS Public

PHP 3 0 0 0 Updated Dec 10, 2024

chmutil Public

Utilities to run Cascaded Hierarchical Model (CHM) jobs on cluster of computers

Python 0 1 7 14 Updated Dec 7, 2024

CIL_Image_Viewer Public

This image viewer utilizes the Leaflet library and the CodeIgniter PHP library for browsing the high definition images.

HTML 3MIT 0 0 0 Updated Oct 31, 2024

Biological_Imaging_Methods_Ontology Public

A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.

5CC-BY-4.0 2 2 1 Updated Oct 18, 2023

cildata_util Public

CIL Data Extraction Utility to download/convert data from legacy CIL website

Python 0 0 2 4 Updated Dec 26, 2022

cdeep3m2 Public

Plug-and-Play deep learning for image segmentation of large-scale microscopy data

Shell 9 4 4 10 Updated Nov 22, 2022

Image_Viewer_Data_Converter Public

Scripts for converting images to the compatible format for the CIL Image Viewer

Python 0MIT 0 0 0 Updated Oct 20, 2021

cdeep3m Public

Please go to https://github.com/CRBS/cdeep3m2 for most recent version

Shell 59 10 2 0 Updated Feb 9, 2020

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