Nagarajan Lab

This repository contains the analysis code for a shotgun-metagenomics study of the gut microbiome and its association with obesity and adiposity in the multi-ethnic Singaporean HELIOS cohort.

github pages for csb5

Scripts associated with the manuscript "GuFi phages represent the most prevalent viral family-level clusters in the human gut microbiome"

NCB Sequencing. Code for paper: "Direct high-throughput deconvolution of non-canonical bases via nanopore sequencing and bootstrapped learning"

LoFreq Star: Sensitive variant calling from sequencing data

Scripts to generate figures for the manuscript titled "Large-scale skin metagenomics reveals extensive prevalence, coordination, and functional adaptation of skin microbiome dermotypes across body sites."

Metagenomic sequencing conducted on blank paraffin blocks or extraction controls.

Data and scripts of Antibiotic Recovery Study