CahanLab

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1. xcellxcellPublic

   web app for analysis and visualization of spatial transcriptomics (ST) and single cell RNA-seq (scRNA-seq) data

   TypeScript 2

2. PySingleCellNetPySingleCellNetPublic

   singleCellNet in Python

   Python 18 12

3. singleCellNetsingleCellNetPublic

   SingleCellNet: classify single cells across species and platforms

   R 141 30

4. epochepochPublic

   gene regulatory network reconstruction from scRNA-Seq

   R 25 11

5. oneSConeSCPublic

   infer transcription factors circuits, simulate single cell expression trajectories

   Python 7 2

6. stemfinderstemfinderPublic

   estimate cell fate potency from single cell RNA-seq data

   R 3