CellProfiling

Codebase for training the SubCell models

Plugins for camacq

Python project to control microscope through client-server program.

Code for "A comprehensive benchmark of sequence-based subcellular localization predictors for human proteins"

Simple wrapper that runs Cellpose segmentation model in a convenient way. It can run nuclei, nuclei + cytoplasm or nuclei + 2 x cytoplasm [combined] segmentation over grayscale images.

A pipeline to transform images into valuable analysis items

Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries

This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images