CIBIV - Center for Integrative Bioinformatics Vienna

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1. IQ-TREE IQ-TREEPublic archive

   Efficient phylogenomic software by maximum likelihood

   C++ 211 45

2. NextGenMap NextGenMapPublic

   NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

   C++ 89 8

3. Teaser TeaserPublic

   A tool to benchmark mappers and different parameters within minutes

   HTML 45 10

4. trumicount trumicountPublic

   Correctly counting molecules using unique molecular identifiers (UMIs)

   TeX 9 1

5. GuaCAMOLE GuaCAMOLEPublic

   GuaCAMOLE (Guanosine Cytosine Aware Metagenomic Opulence Least squares Estimation) algorithm for the efficient detection and removal of GC bias from metagenomic samples

   Python 6 1

6. BODscore BODscorePublic

   Scoring method for identified SNPs

   C 4