I tried to use the last version of clearvolume (1.4.1 jar file) updated with the update Fiji mechanism but I have got the following error on Windows 10 using a NVIDIA Quadro RTX 3000 graphic card.
null
Warning: Caught Exception while retrieving executable temp base directory:
java.io.IOException: Could not determine a temporary executable directory
at com.jogamp.common.util.IOUtil.getTempDir(IOUtil.java:1287)
at com.jogamp.common.util.cache.TempFileCache.<clinit>(TempFileCache.java:81)
at com.jogamp.common.util.cache.TempJarCache.initSingleton(TempJarCache.java:88)
at com.jogamp.common.os.Platform$1.run(Platform.java:309)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.common.os.Platform.<clinit>(Platform.java:287)
at com.jogamp.opengl.GLProfile.<clinit>(GLProfile.java:147)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.<clinit>(ClearGLVolumeRenderer.java:88)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.internalCreateOpenCLRenderer(ClearVolumeRendererFactory.java:281)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.newOpenCLRenderer(ClearVolumeRendererFactory.java:253)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initClearVolumeUnsignedShortArrayImg(ImgLib2ClearVolume.java:273)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initRealImgs(ImgLib2ClearVolume.java:511)
at de.mpicbg.jug.clearvolume.gui.ClearVolumeManager.run(ClearVolumeManager.java:182)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.launchClearVolumeManager(GenericClearVolumeGui.java:306)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.<init>(GenericClearVolumeGui.java:163)
at de.mpicbg.jug.plugins.ClearVolumePlugin.run(ClearVolumePlugin.java:90)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
ClearGLWindow: GLProfile[GL4/GL4.hw]
1.0
1.0
1.0
WindowsJan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : atiocl64
Jan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : amdocl64
Jan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : atiocl32
Jan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : atiocl
Jan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : amdocl32
Jan 29, 2021 12:35:38 PM org.bridj.BridJ log
INFO: Library not found : amdocl
--> Using backend: ClearCLBackendJOCL
clearcl.backend.jocl.ClearCLBackendJOCL@c49702f
________________________________________________________________________________
1 available OpenCL devices:
Device name: Quadro RTX 3000, type: GPU, OpenCL version: 1.20000
max global memory: 6442450944
max local memory: 49152
clock freq: 1215Mhz
nb compute units: 30
extensions: cl_khr_global_int32_base_atomics cl_khr_global_int32_extended_atomics cl_khr_local_int32_base_atomics cl_khr_local_int32_extended_atomics cl_khr_fp64 cl_khr_byte_addressable_store cl_khr_icd cl_khr_gl_sharing cl_nv_compiler_options cl_nv_device_attribute_query cl_nv_pragma_unroll cl_nv_d3d10_sharing cl_khr_d3d10_sharing cl_nv_d3d11_sharing cl_nv_copy_opts cl_khr_gl_event cl_nv_create_buffer
________________________________________________________________________________
Selected device:
Device name: Quadro RTX 3000, type: GPU, OpenCL version: 1.20000
max global memory: 6442450944
max local memory: 49152
clock freq: 1215Mhz
nb compute units: 30
extensions: cl_khr_global_int32_base_atomics cl_khr_global_int32_extended_atomics cl_khr_local_int32_base_atomics cl_khr_local_int32_extended_atomics cl_khr_fp64 cl_khr_byte_addressable_store cl_khr_icd cl_khr_gl_sharing cl_nv_compiler_options cl_nv_device_attribute_query cl_nv_pragma_unroll cl_nv_d3d10_sharing cl_khr_d3d10_sharing cl_nv_d3d11_sharing cl_nv_copy_opts cl_khr_gl_event cl_nv_create_buffer
Device name: ClearCLDevice [mClearCLPlatform=ClearCLPlatform [name=NVIDIA CUDA], name=Quadro RTX 3000]
clearcl.exceptions.ClearCLException: org.bridj.Pointer.pointerToAddress(JJLorg/bridj/PointerIO;Lorg/bridj/Pointer$Releaser;)Lorg/bridj/Pointer;
at clearcl.backend.BackendUtils.checkExceptions(BackendUtils.java:163)
at clearcl.backend.jocl.ClearCLBackendJOCL.wrap(ClearCLBackendJOCL.java:1100)
at clearcl.ClearCLImage.readFrom(ClearCLImage.java:572)
at clearcl.ClearCLImage.readFrom(ClearCLImage.java:596)
at clearvolume.renderer.opencl.OpenCLDevice.writeImage(OpenCLDevice.java:356)
at clearvolume.renderer.opencl.OpenCLVolumeRenderer.fillWithByteBuffer(OpenCLVolumeRenderer.java:418)
at clearvolume.renderer.opencl.OpenCLVolumeRenderer.prepareVolumeDataArray(OpenCLVolumeRenderer.java:238)
at clearvolume.renderer.opencl.OpenCLVolumeRenderer.initVolumeRenderer(OpenCLVolumeRenderer.java:155)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.init(ClearGLVolumeRenderer.java:824)
at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:644)
at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:667)
at jogamp.opengl.GLAutoDrawableBase$1.run(GLAutoDrawableBase.java:431)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1291)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:81)
at com.jogamp.opengl.util.AnimatorBase.display(AnimatorBase.java:452)
at com.jogamp.opengl.util.FPSAnimator$MainTask.run(FPSAnimator.java:178)
at java.util.TimerThread.mainLoop(Timer.java:555)
at java.util.TimerThread.run(Timer.java:505)
Caused by: java.lang.NoSuchMethodError: org.bridj.Pointer.pointerToAddress(JJLorg/bridj/PointerIO;Lorg/bridj/Pointer$Releaser;)Lorg/bridj/Pointer;
at coremem.interop.BridJInterop.getBridJPointer(BridJInterop.java:39)
at coremem.interop.BridJInterop.getBridJPointer(BridJInterop.java:68)
at coremem.MemoryBase.getBridJPointer(MemoryBase.java:841)
at coremem.MemoryBase.getByteBuffer(MemoryBase.java:861)
at clearcl.backend.jocl.ClearCLBackendJOCL.lambda$wrap$36(ClearCLBackendJOCL.java:1102)
at clearcl.backend.BackendUtils.checkExceptions(BackendUtils.java:156)
... 19 more
java.lang.NullPointerException
at cleargl.GLTexture.<init>(GLTexture.java:121)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.ensureTextureAllocated(ClearGLVolumeRenderer.java:629)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.displayInternal(ClearGLVolumeRenderer.java:507)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.display(ClearGLVolumeRenderer.java:489)
at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
at jogamp.opengl.GLAutoDrawableBase$2.run(GLAutoDrawableBase.java:443)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:81)
at com.jogamp.opengl.util.AnimatorBase.display(AnimatorBase.java:452)
at com.jogamp.opengl.util.FPSAnimator$MainTask.run(FPSAnimator.java:178)
at java.util.TimerThread.mainLoop(Timer.java:555)
at java.util.TimerThread.run(Timer.java:505)
Dear
I tried to use the last version of clearvolume (1.4.1 jar file) updated with the update Fiji mechanism but I have got the following error on Windows 10 using a NVIDIA Quadro RTX 3000 graphic card.