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@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

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  1. atlasesatlasesPublic

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 38 21

  2. optimized_antsMultivariateTemplateConstructionoptimized_antsMultivariateTemplateConstructionPublic

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    Shell 40 12

  3. AllenHumanGeneMNIAllenHumanGeneMNIPublic

    Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space

    Jupyter Notebook 12 1

  4. MAGeTBrain-nextflowMAGeTBrain-nextflowPublic

    Shell 3 1

  5. RABIESRABIESPublic

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    Python 62 22

  6. libBIDS.shlibBIDS.shPublic

    Shell 22 4

Repositories

Showing 10 of 58 repositories
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    CoBrALab/RABIES's past year of commit activity
    Python 62 22 55 7 Updated Aug 22, 2026
  • pvraw Public Forked from BrkRaw/brkraw

    Convert raw Bruker Biospin MRI data to NIfTI/BIDS

    CoBrALab/pvraw's past year of commit activity
    Python 0GPL-3.0 30 3 1 Updated Aug 22, 2026
  • LMT-QC-Pipeline Public

    A quality control pipeline for Live Mouse Tracker (LMT) behavioral tracking data using automated gap inference and human-in-the-loop validation.

    CoBrALab/LMT-QC-Pipeline's past year of commit activity
    Python 0MIT 0 2 0 Updated Aug 21, 2026
  • LMT-Overlay-Pipeline Public

    GUI-driven pipeline for generating corrected LMT tracking overlays from SQLite ground-truth data and raw videos. Renders per-animal segmentation masks, pose markers, posture labels, and global frame numbers while preserving the original database and source videos.

    CoBrALab/LMT-Overlay-Pipeline's past year of commit activity
    Python 0MIT 0 0 0 Updated Aug 21, 2026
  • qbatch Public
    CoBrALab/qbatch's past year of commit activity
    Python 34Unlicense 13 28 4 Updated Aug 17, 2026
  • mousefmri_acq_publication Public

    Contains all the code for reproducing analyses and figures in the mouse fmri acquisition guidelines paper

    CoBrALab/mousefmri_acq_publication's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 2, 2026
  • MAGeTBrain-nextflow Public
    CoBrALab/MAGeTBrain-nextflow's past year of commit activity
    Shell 3 1 16 0 Updated Jul 28, 2026
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    CoBrALab/ODC-Mouse-Forms's past year of commit activity
    TypeScript 2 1 10 0 Updated Jul 27, 2026
  • libBIDS.sh Public
    CoBrALab/libBIDS.sh's past year of commit activity
    Shell 22MIT 4 3 1 Updated Jul 6, 2026
  • synthstrip_N3 Public

    A preprocessing tool for human T1w MRIs

    CoBrALab/synthstrip_N3's past year of commit activity
    Shell 2 1 7 0 Updated Jul 6, 2026
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