ComparativeGenomicsToolkit

hal2vg Public

Convert HAL to VG

C++ 24MIT 2 7 0 Updated Aug 13, 2026

cactus Public

Official home of genome aligner based upon notion of Cactus graphs

Python 700 125 583 6 Updated Aug 13, 2026

lastz Public Forked from lastz/lastz

Program for aligning DNA sequences, a pairwise aligner.

C 1MIT 44 0 0 Updated Aug 11, 2026

mafTools Public Forked from dentearl/mafTools

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

C 11 32 0 0 Updated Aug 11, 2026

cactus-gfa-tools Public

C++ 3MIT 1 2 0 Updated Aug 11, 2026

hal Public

Hierarchical Alignment Format

C++ 186 40 111 0 Updated Aug 11, 2026

paffy Public

Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

C 7 2 2 0 Updated Aug 11, 2026

taffy Public

This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

C 35MIT 3 11 3 Updated Aug 11, 2026

sonLib Public

Small general-purpose library for C and Python with an emphasis on bioinformatics.

C 8MIT 4 4 5 Updated Aug 10, 2026

pinchesAndCacti Public

Library for constructing pinch graphs and cactus graphs

C 2 1 0 0 Updated Jul 26, 2026

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ComparativeGenomicsToolkit

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