Multistate_Complex_AF

Scripts for the analysis of multiple assembly states of protein complexes.

Usage

Requirements

1. python 3.8
2. biopython
3. numpy
4. matplotlib

conda create -n Multistate_Complex_AF python=3.8

conda activate Multistate_Complex_AF

pip install biopython==1.83 numpy==1.24.2 matplotlib==3.7.2

(Install time: several minutes)

Command

python YidC_rotations.py ./input/ -o ./output/

(Run time: several seconds)

$input is the path of the input files.

$output is the path of the output file.

Output

The rotation angle of YidC for the given structural model (0_reference: 157.30°).

References

The implementation is based on the projects:

[1] https://github.com/sokrypton/colabfold

[2] https://www.biorxiv.org/content/10.1101/2024.06.09.598121v4.supplementary-material