Pull Request#5

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anthonymccreeryosg wants to merge 3 commits into
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Pull Request #5

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cefa01c
Update 1
CrumpLab Jan 28, 2019
18cb9d2
Update 1
anthonymccreeryosg Nov 2, 2020
3de5ed4
Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…
anthonymccreeryosg Nov 2, 2020
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4 changes: 2 additions & 2 deletions _site.yml
View file
Open in desktop
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
title: "MyLabJournal"
title: "OSG Reports"
left:
- text: "Home"
href: index.html
Expand Down
209 changes: 166 additions & 43 deletions docs/Journal.html
View file
Open in desktop
Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
max-width:100%;
height: auto;
}
.tabbed-pane {
padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
padding-top: 56px;
margin-top: -56px;
}

.section h2 {
padding-top: 56px;
margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
padding-top: 56px;
margin-top: -56px;
}
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
background: white;
border: 1px solid #ddd;
border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "&#xe258;";
border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}

// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>

<!-- code folding -->

// establish options
var options = {
selectors: "h1",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;

// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
float: right;
}
}

.toc-content {
padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
font-size: 0.90em;
padding-left: 25px;
text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">MyLabJournal</a>
<a class="navbar-brand" href="index.html">OSG Reports</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});

$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open')
});
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');

// establish options
var options = {
selectors: "h1",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;

// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
Expand Down
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
Pull Request#5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

 Sign up for GitHub

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privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
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to your account

 Open

anthonymccreeryosg
wants to merge
3
commits into

base:master
Choose a base branch

from

 Open


Pull Request
#5
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Commits

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3 commits


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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Pull Request#5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

 Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and
privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Open

anthonymccreeryosg
wants to merge
3
commits into

base:master
Choose a base branch

from

 Open


Pull Request
#5
Show file tree
Hide file tree
 Changes from all commits
Commits

Show all changes


3 commits


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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

File filter

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Filter by extension
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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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Pull Request#5

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anthonymccreeryosg
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3
commits into

base:master
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Pull Request
#5
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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Pull Request#5

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Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

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privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Open

anthonymccreeryosg
wants to merge
3
commits into

base:master
Choose a base branch

from

 Open


Pull Request
#5
Show file tree
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3 commits


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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

File filter

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Pull Request#5

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anthonymccreeryosg
wants to merge
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commits into

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#5
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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
Expand Down
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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Pull Request#5

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Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

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privacy statement. We’ll occasionally send you account related emails.

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to your account

 Open

anthonymccreeryosg
wants to merge
3
commits into

base:master
Choose a base branch

from

 Open


Pull Request
#5
Show file tree
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cefa01c

Update 1


CrumpLab Jan 28, 2019
18cb9d2

Update 1


anthonymccreeryosg Nov 2, 2020
3de5ed4

Merge branch 'master' of https://github.com/anthonymccreeryosg/OSG_Re…


anthonymccreeryosg Nov 2, 2020

File filter

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Filter by extension
Conversations

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4 changes: 2 additions & 2 deletions
_site.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
name: "MyLabJournal"
name: "OSG Reports"
navbar:
 title: "MyLabJournal"
 title: "OSG Reports"
 left:
 - text: "Home"
 href: index.html
Expand Down

209 changes: 166 additions & 43 deletions
docs/Journal.html

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">
<html>

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />



Expand All@@ -25,6 +25,17 @@
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
<script src="site_libs/anchor-sections-1.0/anchor-sections.js"></script>

<style type="text/css">
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
 span.underline{text-decoration: underline;}
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
 </style>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
Expand DownExpand Up@@ -72,9 +83,7 @@
</style>


</head>

<body>

<style type = "text/css">
.main-container {
Expand All@@ -88,7 +97,6 @@
}
img {
 max-width:100%;
 height: auto;
}
.tabbed-pane {
 padding-top: 12px;
Expand All@@ -99,6 +107,9 @@
button.code-folding-btn:focus {
 outline: none;
}
summary {
 display: list-item;
}
</style>


Expand All@@ -113,7 +124,6 @@
 padding-top: 56px;
 margin-top: -56px;
}

.section h2 {
 padding-top: 56px;
 margin-top: -56px;
Expand All@@ -134,6 +144,43 @@
 padding-top: 56px;
 margin-top: -56px;
}
.dropdown-submenu {
 position: relative;
}
.dropdown-submenu>.dropdown-menu {
 top: 0;
 left: 100%;
 margin-top: -6px;
 margin-left: -1px;
 border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
 display: block;
}
.dropdown-submenu>a:after {
 display: block;
 content: " ";
 float: right;
 width: 0;
 height: 0;
 border-color: transparent;
 border-style: solid;
 border-width: 5px 0 5px 5px;
 border-left-color: #cccccc;
 margin-top: 5px;
 margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
 border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
 float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
 left: -100%;
 margin-left: 10px;
 border-radius: 6px 0 6px 6px;
}
</style>

<script>
Expand All@@ -154,47 +201,66 @@
});
</script>

<!-- tabsets -->

<div class="container-fluid main-container">
<style type="text/css">
.tabset-dropdown > .nav-tabs {
 display: inline-table;
 max-height: 500px;
 min-height: 44px;
 overflow-y: auto;
 background: white;
 border: 1px solid #ddd;
 border-radius: 4px;
}

<!-- tabsets -->
<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});
</script>
.tabset-dropdown > .nav-tabs > li.active:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

<!-- code folding -->
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
 content: "&#xe258;";
 border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
 content: "";
 font-family: 'Glyphicons Halflings';
 display: inline-block;
 padding: 10px;
 border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
 display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
 border: none;
 display: inline-block;
 border-radius: 4px;
 background-color: transparent;
}

<script>
$(document).ready(function () {
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
 display: block;
 float: none;
}

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');
.tabset-dropdown > .nav-tabs > li {
 display: none;
}
</style>

<!-- code folding -->

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

Expand All@@ -208,6 +274,12 @@
}
}

@media print {
.toc-content {
 /* see https://github.com/w3c/csswg-drafts/issues/4434 */
 float: right;
}
}

.toc-content {
 padding-left: 30px;
Expand DownExpand Up@@ -243,8 +315,6 @@

.tocify-subheader .tocify-item {
 font-size: 0.90em;
 padding-left: 25px;
 text-indent: 0;
}

.tocify .list-group-item {
Expand All@@ -254,6 +324,16 @@

</style>



</head>

<body>


<div class="container-fluid main-container">


<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
Expand All@@ -274,7 +354,7 @@
 <span class="icon-bar"></span>
 <span class="icon-bar"></span>
 </button>
 <a class="navbar-brand" href="index.html">MyLabJournal</a>
 <a class="navbar-brand" href="index.html">OSG Reports</a>
 </div>
 <div id="navbar" class="navbar-collapse collapse">
 <ul class="nav navbar-nav">
Expand DownExpand Up@@ -308,7 +388,7 @@ <h1 class="title toc-ignore">Journal</h1>
<p>This is an .Rmd file. It is plain text with special features. Any time you write just like this, it will be compiled to normal text in the website. If you put a # in front of your text, it will create a top level-header.</p>
<div id="my-first-post" class="section level1">
<h1>My first post</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>Notice that whatever you define as a top level header, automatically gets put into the table of contents bar on the left.</p>
<div id="second-level-header" class="section level2">
<h2>Second level header</h2>
Expand All@@ -321,7 +401,7 @@ <h3>third level header</h3>
</div>
<div id="my-second-post-note-the-order" class="section level1">
<h1>My second post (note the order)</h1>
<p>2018 | 7 | 23 Last compiled: 2019-01-28</p>
<p>2018 | 7 | 23 Last compiled: 2020-11-02</p>
<p>I’m writing this tutorial going from the top down. And, this is how it will be printed. So, notice the second post is second in the list. If you want your most recent post to be at the top, then make a new post starting at the top. If you want the oldest first, do, then keep adding to the bottom</p>
</div>
<div id="adding-r-stuff" class="section level1">
Expand DownExpand Up@@ -429,7 +509,7 @@ <h1>Replace this with problem 4</h1>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
 $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
 $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
 bootstrapStylePandocTables();
Expand All@@ -438,6 +518,49 @@ <h1>Replace this with problem 4</h1>

</script>

<!-- tabsets -->

<script>
$(document).ready(function () {
 window.buildTabsets("TOC");
});

$(document).ready(function () {
 $('.tabset-dropdown > .nav-tabs > li').click(function () {
 $(this).parent().toggleClass('nav-tabs-open')
 });
});
</script>

<!-- code folding -->

<script>
$(document).ready(function () {

 // move toc-ignore selectors from section div to header
 $('div.section.toc-ignore')
 .removeClass('toc-ignore')
 .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

 // establish options
 var options = {
 selectors: "h1",
 theme: "bootstrap3",
 context: '.toc-content',
 hashGenerator: function (text) {
 return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
 },
 ignoreSelector: ".toc-ignore",
 scrollTo: 0
 };
 options.showAndHide = true;
 options.smoothScroll = true;

 // tocify
 var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
 (function () {
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