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1. Fragmentomics_BiomarkerFragmentomics_BiomarkerPublic

   Fragmentomics analysis of cfDNA using WGS: alignment, fragment-length profiling, end-motif analysis, healthy vs cancer comparisons, and biomarker discovery.

   Python

2. RNA-Structure-AIRNA-Structure-AIPublic

   RNA 3D structure prediction with template + SS-MSA guidance for OpenFold3 and Boltz-2, benchmarked against baselines.

   Python

3. RNAMotifDBRNAMotifDBPublic

   RNA 3D motif extraction, template search, structural comparison, and template-guided assembly workflows.

   C++

4. Daark-Devil.github.ioDaark-Devil.github.ioPublic

   Personal bioinformatics portfolio: RNA structure prediction, cfDNA fragmentomics, and computational genomics pipelines.

   HTML

5. SCRNA_Breast_Cancer_AtlasSCRNA_Breast_Cancer_AtlasPublic

   Integrated analysis of normal, ER+, HER2+, TNBC and metastatic breast cancer single-cell transcriptomes to identify cell populations, epithelial tumor states and subtype-specific programs.

   Python

6. Breast_Cancer_Somatic_Mutation_AnalysisBreast_Cancer_Somatic_Mutation_AnalysisPublic

   End-to-end tumor-normal WGS pipeline using BWA, GATK Mutect2, SnpEff and cancer-gene prioritization to identify candidate breast cancer driver mutations.

   HTML