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@Danko-Lab

Danko Lab @Cornell

We study how gene expression is encoded in DNA, and how this process contributes to evolution, development, and disease.

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  1. dREGdREGPublic

    Detecting Regulatory Elements using GRO-seq and PRO-seq

    R 41 20

  2. rtfbs_dbrtfbs_dbPublic

    Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

    R 23 8

  3. tfTargettfTargetPublic

    Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data

    R 9 3

  4. proseq2.0proseq2.0Public

    Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing

    Shell 30 17

  5. RgtsvmRgtsvmPublic

    The R package for SVM with GPU architecture based on the GTSVM software

    C++ 32 11

  6. BayesPrismBayesPrismPublic

    A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

    HTML 245 59

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