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Enviroment set up problem

Status: Open.

#71In DeepGraphLearning/GearNet;

· xuezhixie-cell opened on Dec 12, 2025

How to pass the protein pdb file to the released model weight: (mc_gearnet_edge.pth)

Status: Open.

#69In DeepGraphLearning/GearNet;

· Tizzzzy opened on Aug 22, 2024

How to check the representation of a 3D structure data

Status: Open.

#68In DeepGraphLearning/GearNet;

· Tizzzzy opened on Aug 22, 2024

Working with batches of proteins with different sizes

Status: Open.

#66In DeepGraphLearning/GearNet;

· mpedraza98 opened on Jul 9, 2024

Why is the Batch Size for Downstream Tasks Set to 2? It Seems Quite Slow

Status: Open.

#65In DeepGraphLearning/GearNet;

· minjiecheng opened on Jul 8, 2024

About data_setting from species_start: 0 to species_end: 22 of alphafolddb_v2

Status: Open.

#64In DeepGraphLearning/GearNet;

· minjiecheng opened on Jun 29, 2024

how Fmax and AUPRC are calculated?

Status: Open.

#63In DeepGraphLearning/GearNet;

· Qzhangyx opened on May 7, 2024

Problems in using "fold_mc_gearnet_edge_ieconv.pth"

Status: Open.

#62In DeepGraphLearning/GearNet;

· haniulu opened on May 4, 2024

Problems in using FC dataset

Status: Open.

#61In DeepGraphLearning/GearNet;

· Yangqy-16 opened on Mar 30, 2024

Seeking help for dataset

Status: Open.

#60In DeepGraphLearning/GearNet;

· zsc2003 opened on Mar 14, 2024

RuntimeError: shape '[31, 147]' is invalid for input of size 651 in extracting embbeding from pdb files

Status: Open.

#59In DeepGraphLearning/GearNet;

· blazexpire opened on Dec 17, 2023

Extract the structure embeddings

Status: Open.

#58In DeepGraphLearning/GearNet;

· Jerry888Chen opened on Dec 12, 2023