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DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

33 followers
Germany
https://deepmicroscopy.org

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SlideRunner SlideRunnerPublic
SlideRunner is a tool for massive cell annotations in whole slide images
Python 81 12
Exact ExactPublic
An open source online platform for collaborative image labeling of almost everything
JavaScript 63 19
MITOS_WSI_CCMCT MITOS_WSI_CCMCTPublic
Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images
Jupyter Notebook 31 10
MIDOGpp MIDOGppPublic
A large, multi-domain mitotic Figure Dataset
Python 27 17
MITOS_WSI_CMC MITOS_WSI_CMCPublic
Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images
Jupyter Notebook 22 10
MIDOG MIDOGPublic
MItosis DOmain Generalization Challenge 2021/2022
Python 14 5

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Showing 10 of 59 repositories

FM4MFdet Public
Foundation Models for Mitotic Figure Detection
DeepMicroscopy/FM4MFdet's past year of commit activity
Python 0 0 0 0 Updated Aug 17, 2026
Exact Public
An open source online platform for collaborative image labeling of almost everything
DeepMicroscopy/Exact's past year of commit activity
JavaScript 63MIT 19 17 0 Updated Jul 31, 2026
MitoSim Public
3D Simulation of Mitotic Figures and their appearance in H&E
DeepMicroscopy/MitoSim's past year of commit activity
HTML 0 0 0 0 Updated Jul 24, 2026
FreeLeaf Public
An free and open latex collaborative suite
DeepMicroscopy/FreeLeaf's past year of commit activity
TypeScript 1AGPL-3.0 0 0 0 Updated Jul 23, 2026
DICOM_Anonymizer Public
DeepMicroscopy/DICOM_Anonymizer's past year of commit activity
Python 1 1 0 0 Updated Jul 20, 2026
RetroScope Public
An Open Framework for Motorizing and Digitizing Vintage Microscopes
DeepMicroscopy/RetroScope's past year of commit activity
Python 0Apache-2.0 0 0 0 Updated Jul 7, 2026
MIDOG2025 Public
Analysis of the results of the MIDOG 2025 challenge
DeepMicroscopy/MIDOG2025's past year of commit activity
HTML 0 0 0 0 Updated Jun 19, 2026
EXACT-Sync Public Forked from ChristianMarzahl/EXACT-Sync
Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact
DeepMicroscopy/EXACT-Sync's past year of commit activity
Python 1MIT 4 0 0 Updated May 1, 2026
MIDOGpp Public
A large, multi-domain mitotic Figure Dataset
DeepMicroscopy/MIDOGpp's past year of commit activity
Python 27MIT 17 2 0 Updated Apr 24, 2026
SWAN Public
DeepMicroscopy/SWAN's past year of commit activity
Python 2 0 11 0 Updated Mar 30, 2026

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