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1. broadinstitute/gatkbroadinstitute/gatkPublic

   Official code repository for GATK versions 4 and up

   Java 2k 627

2. Sentieon/Sentieon-cwlSentieon/Sentieon-cwlPublic

   CWL pipelines for the Sentieon tools

   Common Workflow Language 4 2

3. Sentieon/sentieon-dockerSentieon/sentieon-dockerPublic

   Example Dockerfiles for use with the Sentieon software

   Dockerfile 9 6

4. Sentieon/sentieon-scriptsSentieon/sentieon-scriptsPublic

   Helper scripts for biological data processing from Sentieon

   Shell 65 23

5. Sentieon/hap-evalSentieon/hap-evalPublic

   A VCF comparison engine for structual variant benchmarking

   Python 24 4

6. Sentieon/sentieon-cliSentieon/sentieon-cliPublic

   A command-line interface for Sentieon pipelines

   Python 16 5