@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

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  1. pytfapytfaPublic

    A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming 47 29

  2. etfletflPublic

    ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python 18 18

  3. skimpyskimpyPublic

    Symbolic Kinetic Models with Python

    Python 38 14

  4. redhumanredhumanPublic

    redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB 6 2

  5. rekindlerekindlePublic

    REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python 10 3

  6. RENAISSANCERENAISSANCEPublic

    REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook 19 3

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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
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  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


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, 'i');
if (__m === '*' || __re.test(location.href)) {
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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


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Showing 10 of 36 repositories
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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


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Showing 10 of 36 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
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observer.observe(document.body, { childList: true, subtree: true });
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})();
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try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


Repositories

Showing 10 of 36 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
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function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
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observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
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var __m = "*";
var __re = new RegExp('^' + ".*" + '

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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


Repositories

Showing 10 of 36 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
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observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
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try {
var __m = "*";
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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


Repositories

Showing 10 of 36 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
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var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
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filter: invert(1) hue-rotate(180deg) !important;
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filter: invert(1) hue-rotate(180deg) !important;
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@EPFL-LCSB

LCSB@EPFL

Laboratory of Computational Systems Biotechnology

Pinned
Loading
  1. pytfapytfaPublic
    
A Python 3 implementation of Thermodynamics-based Flux Analysis

    Linear Programming
47

29

  2. etfletflPublic
    
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

    Python
18

18

  3. skimpyskimpyPublic
    
Symbolic Kinetic Models with Python

    Python
38

14

  4. redhumanredhumanPublic
    
redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

    MATLAB
6

2

  5. rekindlerekindlePublic
    
REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

    Python
10

3

  6. RENAISSANCERENAISSANCEPublic
    
REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

    Jupyter Notebook
19

3


Repositories

Showing 10 of 36 repositories
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