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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTkPublic

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 617 100

  2. CheckM CheckMPublic

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 411 76

  3. gtdb-species-clusters gtdb-species-clustersPublic

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3

  4. BamM BamMPublic archive

    Metagenomics-focused BAM file manipulation

    C 15 7

  5. GTDBNCBI GTDBNCBIPublic

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator MannotatorPublic archive

    Microbial annotation pipeline - in progress

    Perl 5 5

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