Edinburgh Genomics

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1. Analysis-DriverAnalysis-DriverPublic

   Pipelines for Illumina HiSeqX demultiplexing, sequence QC and variant calling.

   Python 8

2. Reporting-AppReporting-AppPublic

   A Flask web app for presenting bcl2fastq and variant calling performance reports from Analysis-Driver

   Python 4 1

3. EGCG-Project-ManagementEGCG-Project-ManagementPublic

   Tools for managing the data generated by EdinburghGenomics/Analysis-Driver, including review, delivery and deletion.

   Python 1

4. clarity_scriptsclarity_scriptsPublic

   API and EPP scripts

   Python 1

5. EGCG-CoreEGCG-CorePublic

   Shared functionality across EGCG projects

   Python 2

6. pyclarity-limspyclarity-limsPublic

   Forked from SciLifeLab/genologics

   Python interface to the GenoLogics LIMS server via its REST API.

   Python 11 5