EngqvistLab

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1. Tome TomePublic

   A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

   Python 66 15

2. fetch_microbial_growth_temperatures fetch_microbial_growth_temperaturesPublic

   Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.

   Python 6 1

3. UniRep50 UniRep50Public

   A slighlty modified version of the UniRep model

   Jupyter Notebook 5 2

4. DeepET_reps DeepET_repsPublic

   An installable library to get DeepET representations.

   Jupyter Notebook 3 2

5. orgtools orgtoolsPublic

   A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.

   Python 2

6. cheminformatics cheminformaticsPublic

   Jupyter Notebook 2