Euro-BioImaging ERIC

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1. EuBI-Bridge EuBI-BridgePublic

   A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

   Python 32 1

2. BatchConvert BatchConvertPublic

   A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

   Python 31 4

3. ome_zarr_pyramid ome_zarr_pyramidPublic

   Python 7

4. FAIR101-Workshop-on-data-deposition-into-BioImage-Archive FAIR101-Workshop-on-data-deposition-into-BioImage-ArchivePublic

   4

5. OME_Zarr_Tools OME_Zarr_ToolsPublic

   Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023

   Shell 3

6. ZarrSeg ZarrSegPublic

   Command line tool to segment local and remote OME-Zarr data

   Python 3