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virtualspecies

The virtualspecies R package

This package provides a user-friendly framework for generating virtual species distribution, integrating the existing methodological approaches. The package includes (1) generating virtual species’ suitability from a spatial set of environmental conditions, with two different approaches; (2) converting the environmental suitability into presence-absence with a probabilistic approach; (3) introducing dispersal limitations in the realised virtual species distributions and (4) sampling occurrences with different biases in the sampling procedure.

There is a full online tutorial available here: http://borisleroy.com/virtualspecies/

Update 1.6 : shift from raster to terra

virtualspecies has been updated to version 1.6 in September 2023. The major change in this update is that now this package relies upon the R package terra rather than raster; in addition, internally it uses functions from the package sf rather than sp. This update was required since multiple spatial packages are going to be retired from R, and future developments and improvements of spatial packages will rely on terra and sf.

This update may cause some breaking changes. I maintained the changes as minimal as possible so that previous code (version <= 1.5) will still be compatible with the new code (version >= 1.6). However, objects generated in versions <= 1.5 will likely not be compatible with the package version 1.6. They can still be converted manually to become compatible, using functions from the package terra such as rast(). If you find yourself in trouble, email me about that. In addition, the methods in functions limitDistribution() and sampleOccurrences() have changed slightly because they now use the package rnaturaleath (formerly they used rworldmap).

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virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
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==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
Resources
Readme
Activity
Stars
19 stars
Watchers
2 watching
Forks
6 forks
Report repository
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CRAN_Status_Badgerstudio mirror downloadsrstudio mirror downloadsResearch software impact
==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
Resources
Readme
Activity
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19 stars
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2 watching
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6 forks
Report repository
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CRAN_Status_Badgerstudio mirror downloadsrstudio mirror downloadsResearch software impact
==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
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2 watching
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6 forks
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==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
Resources
Readme
Activity
Stars
19 stars
Watchers
2 watching
Forks
6 forks
Report repository
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==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
Resources
Readme
Activity
Stars
19 stars
Watchers
2 watching
Forks
6 forks
Report repository
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Used by
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CRAN_Status_Badgerstudio mirror downloadsrstudio mirror downloadsResearch software impact
==============
virtualspecies
The virtualspecies R package
This package provides a user-friendly framework for generating virtual species
distribution, integrating the existing methodological approaches.
The package includes (1) generating virtual species’ suitability from a spatial
set of environmental conditions, with two different approaches; (2) converting
the environmental suitability into presence-absence with a probabilistic
approach; (3) introducing dispersal limitations in the realised virtual species
distributions and (4) sampling occurrences with different biases in the sampling
procedure.
There is a full online tutorial available here:
http://borisleroy.com/virtualspecies/
Update 1.6 : shift from raster to terra
virtualspecies has been updated to version 1.6 in September 2023. The major
change in this update is that now this package relies upon the R package
terra rather than raster; in addition, internally it uses functions from
the package sf rather than sp. This update was required since multiple
spatial packages are going to be retired from R, and future developments and
improvements of spatial packages will rely on terra and sf.
This update may cause some breaking changes. I maintained the changes as
minimal as possible so that previous code (version <= 1.5) will still be
compatible with the new code (version >= 1.6). However, objects generated
in versions <= 1.5 will likely not be compatible with the package version 1.6.
They can still be converted manually to become compatible, using functions
from the package terra such as rast(). If you find yourself
in trouble, email me about that. In addition, the methods in functions
limitDistribution() and sampleOccurrences() have changed slightly because
they now use the package rnaturaleath (formerly they used rworldmap).
About
The virtualspecies R package
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Readme
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Stars
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2 watching
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