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FlyBrainLab Datasets

This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.) Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases. Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.

FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe

FlyCircuit Dataset[1]

FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"

Hemibrain Dataset[2]

Original data licensed under CC-BY 4.0.

Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"

Larva L1EM[3]

Original data licensed under CC-BY-SA 4.0.

L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"

Medulla 7 Column Dataset[4]

Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.

Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"

Male Adult Nerve Cord Dataset[5]

Original data licensed under CC-BY.

MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"

FlyWire Dataset[6]

Original data licensed under CC-BY-NC.

FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"

FIB19 Optic Lobe Dataset[7]

Original data licensed under CC-BY.

Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"

Optic Lobe Dataset[8]

Original data licensed under CC-BY.

Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link

To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):

/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"

References

  1. Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2. Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3. Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4. Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5. Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord eLife 13: RP97769, 2024. DOI.
  6. Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain Nature 634, 124-138, 2024. DOI.
  7. Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8. Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.

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GitHub - FlyBrainLab/datasets · GitHub
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FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
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GitHub - FlyBrainLab/datasets · GitHub
Skip to content
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FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
About
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1 fork
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var __re = new RegExp('^' + ".*" + '
GitHub - FlyBrainLab/datasets · GitHub
Skip to content
BranchesTags
Repository files navigation
FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
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GitHub - FlyBrainLab/datasets · GitHub
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FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
About
No description, website, or topics provided.
Resources
Readme
BSD-3-Clause license
Activity
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8 stars
Watchers
2 watching
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1 fork
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, 'i');
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GitHub - FlyBrainLab/datasets · GitHub
Skip to content
BranchesTags
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FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
About
No description, website, or topics provided.
Resources
Readme
BSD-3-Clause license
Activity
Custom properties
Stars
8 stars
Watchers
2 watching
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1 fork
Report repository
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GitHub - FlyBrainLab/datasets · GitHub
Skip to content
BranchesTags
Repository files navigation
FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
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GitHub - FlyBrainLab/datasets · GitHub
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FlyBrainLab Datasets
This repository contains information regarding the FlyBrainLab Datasets (version, source, loading scripts, etc.)
Here, we provide a summary of the datasets available under NeuroArch database, and links to the preloaded database backup files that can be used to restored the databases.
Detailed instructions for loading these databases from scratch are provided in the individual folders and/or notebooks.
FlyCircuit | Hemibrain | Larva L1EM | Medulla 7 Column | MANC | FlyWire | FIB19 Optic Lobe
FlyCircuit Dataset[1]
FlyCircuit Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.20414129flycircuit1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flycircuit admin admin; restore database /path/to/flycircuit1.2_na_v2.0.1_backup.zip"
Hemibrain Dataset[2]
Original data licensed under CC-BY 4.0.
Hemibrain Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.0.173d6b81hemibrain1.0.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.173d6b81hemibrain1.1_na_v1.0_backup.zipLink01/27/2021 Release NotesLink
1.20414129hemibrain1.2_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/hemibrain admin admin; restore database /path/to/hemibrain1.2_na_v2.0.1_backup.zip"
Larva L1EM[3]
Original data licensed under CC-BY-SA 4.0.
L1EM Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.00414129l1em1.0_na_v2.0.1_backup.zipLink06/17/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/l1em admin admin; restore database /path/to/l1em1.0_na_v2.0.1_backup.zip"
Medulla 7 Column Dataset[4]
Original data licensed under BSD 3. Neuron Skeleton data from ConnectomeHackathon2015 and is licensed under the Open Data Commons Attribution License.
Medulla Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
fib250414129medulla7column_fib25_na_v2.0.2_backup.zipLink07/06/2022 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/medulla admin admin; restore database /path/to/medulla7column_fib25_na_v2.0.2_backup.zip"
Male Adult Nerve Cord Dataset[5]
Original data licensed under CC-BY.
MANC Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43manc1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/manc admin admin; restore database /path/to/manc1.0_na_v1.0.0_backup.zip"
FlyWire Dataset[6]
Original data licensed under CC-BY-NC.
FlyWire SnapshotNeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
6301126f43flywire630_na_v1.0.0_backup.zipLink08/16/2023 Release Notes
7831126f43flywire783_na_v1.0.1_backup.zip12/17/2024Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/flywire admin admin; restore database /path/to/flywire630_na_v1.0.0_backup.zip"
FIB19 Optic Lobe Dataset[7]
Original data licensed under CC-BY.
Fib19 Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43fib19_1.0_na_v1.0.0_backup.zipLink08/16/2023 Release NotesLink
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/fib19 admin admin; restore database /path/to/fib19_1.0_na_v1.0.0_backup.zip"
Optic Lobe Dataset[8]
Original data licensed under CC-BY.
Optic-Lobe Ver.NeuroArch Ver.Download LinkLoading ScriptLast UpdateNeuroNLP
1.01126f43optic-lobe1.0_na_v1.0.0_backup.zip12/17/2025Link
To load the database in OrientDB, use the following command (and replace /path/to in two places to the directory of the orientdb and the downloaded zip file, respectively):
/path/to/orientdb/bin/console.sh "create database plocal:../databases/optic_lobe admin admin; restore database /path/to/optic_lobe1.0_na_v1.0.0_backup.zip"
References
  1.  Ann-Shyn Chiang et al., Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution, Current Biology 2011, 21(1), pp.1-11. DOI.
  2.  Louis K. Scheffer et al., A connectome and analysis of the adult Drosophila central brain. eLife 2020;9:e57443. DOI.
  3.  Ohyama T. et al., A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 2015. DOI.
  4.  Takemura S. et al., Synaptic circuits and their variations in the fly medulla. Proceedings of the National Academy of Sciences. 2015, 112 (44) 13711-13716. DOI.
  5.  Shin-ya Takemura et al., A Connectome of the Male Drosophila Ventral Nerve Cord
eLife 13: RP97769, 2024. DOI.
  6.  Sven Dorkenwald et al., Neuronal wiring diagram of an adult brain
Nature 634, 124-138, 2024. DOI.
  7.  Kazunori Shinomiya et al., Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain. eLife 8:e40025, 2019. DOI.
  8.  Aljoscha Nern et al., Connectome-driven neural inventory of a complete visual system. Nature 641 1225–1237, 2025. DOI.
About
No description, website, or topics provided.
Resources
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BSD-3-Clause license
Activity
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Stars
8 stars
Watchers
2 watching
Forks
1 fork
Report repository
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