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iTIME

iTIME (interactive Tumor Immune MicroEnvironment) is a shiny application that creates interactive figures for examining spatial organization of individual tumors and provide basic spatial and summary information. This project was initiated as part of the Moffitt Biodata Club 2020 Hackathon.

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interactive Tumor Immune MicroEnvironment

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, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
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function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
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btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
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(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
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iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
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iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
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var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
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frag.appendChild(span);
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if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
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highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
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observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
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BranchesTags
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iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
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});
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function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
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mutations.forEach(function(m) {
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if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
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});
}
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});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
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BranchesTags
Repository files navigation
iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
Skip to content
BranchesTags
Repository files navigation
iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
Skip to content
BranchesTags
Repository files navigation
iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
// Create style element if it doesn't exist
var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
style.textContent = '
/* Invert everything except media */
html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
}
/* Restore images, videos, iframes, canvas */
img, video, iframe, canvas, svg, picture, [style*="background-image"] {
filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
}
/* Scrollbars */
::-webkit-scrollbar { background: #1a1a2e !important; }
::-webkit-scrollbar-thumb { background: #444 !important; }
::-webkit-scrollbar-thumb:hover { background: #555 !important; }
/* Selection */
::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
';
}
function removeDarkMode() {
var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
}
// Toggle with Alt+Shift+D
document.addEventListener('keydown', function(e) {
if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
console.log('[Universal Dark Mode] Enabled');
} else {
removeDarkMode();
console.log('[Universal Dark Mode] Disabled');
}
}
});
// Apply on load
applyDarkMode();
// Re-apply on dynamic content
var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
GitHub - FridleyLab/iTIME: interactive Tumor Immune MicroEnvironment · GitHub
Skip to content
BranchesTags
Repository files navigation
iTIME 
iTIME (interactive Tumor Immune MicroEnvironment) is a shiny
application that creates interactive figures for examining spatial
organization of individual tumors and provide basic spatial and summary
information. This project was initiated as part of the Moffitt Biodata
Club 2020 Hackathon.
About
interactive Tumor Immune MicroEnvironment
Resources
Readme
Activity
Custom properties
Stars
4 stars
Watchers
3 watching
Forks
6 forks
Report repository
Releases
Packages
Contributors
Languages