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spatialTIME

The goal of spatialTIME is to perform basic analysis and plotting of IF data from Vectra.

Installation

You can install spatialTIME from GitHub with:

# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")

Usage

spatialTIME currently implements both univariate and bi-variate Ripley’s K analyses. The basis of the spatialTIME functions is the creation of the mif object.

x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found

Additional resources

For a more in-depth description of the methods used, please see the included vignette.

For a point-and-click resource that performs related analyses please check out iTIME.

About

No description, website, or topics provided.

Resources

Readme
Activity
Custom properties

Stars

6 stars

Watchers

4 watching

Forks

5 forks
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GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
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spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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try {
var __m = "*";
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GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
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GitHub - FridleyLab/spatialTIME · GitHub
Skip to content
BranchesTags
Repository files navigation
spatialTIME 
The goal of spatialTIME is to perform basic analysis and plotting of
IF data from Vectra.
Installation
You can install spatialTIME from GitHub with:
# install.packages("devtools")devtools::install_github("fridleylab/spatialTIME")
Usage
spatialTIME currently implements both univariate and bi-variate
Ripley’s K analyses. The basis of the spatialTIME functions is the
creation of the mif object.
x<- create_mif(clinical_data=example_clinical,
sample_data=example_summary,
spatial_list=example_spatial,
patient_id="deidentified_id", sample_id="deidentified_sample",
clean_columns=TRUE)
x## 229 patients spanning 229 samples and 5 spatial data frames were found
Additional resources
For a more in-depth description of the methods used, please see the
included vignette.
For a point-and-click resource that performs related analyses please
check out iTIME.
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
6 stars
Watchers
4 watching
Forks
5 forks
Report repository
Releases
Packages
Used by
Contributors
Languages