Frietze Lab @ UVM

General ChIPseq and epigenetic-seq workflow R package with support for t-SNE and UMAP to discover combinatorial epigenetic patterns.

R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.

R package to do peak saturation analysis for ChIP-seq.

R package to help with TAP pipeline outputs

Apply tSNE for analysis of ChIPseq and related dataset

Scripts and other computational resources for the EIDA core

Make it easier to with GO terms in R.