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GLMr

LinuxWindows
Build StatusBuild status

DOI

R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.

Refer to the GLM3r package to interface with GLM version 3+

Installation

You can install GLMr from Github with:

# install.packages("devtools")devtools::install_github("GLEON/GLMr")

Usage

Run

library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize

library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)

About

R package for basic GLM model running

Resources

Readme
Activity
Custom properties

Stars

9 stars

Watchers

15 watching

Forks

15 forks
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
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9 stars
Watchers
15 watching
Forks
15 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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BranchesTags
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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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BranchesTags
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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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GLMr
LinuxWindows
Build StatusBuild status
DOI
R package for basic GLM model running. GLMr is pinned to version v2.2.0rc of the General Lake Model (GLM) for linux, mac, and windows platforms. This package does not contain the source code for the model, only the executable, and functions for handling the various platform requirements for running the model. Also, use glm_version() to figure out what version of GLM you are running.
Refer to the GLM3r package to interface with GLM version 3+
Installation
You can install GLMr from Github with:
# install.packages("devtools")devtools::install_github("GLEON/GLMr")
Usage
Run
library(GLMr)
sim_folder<- system.file('extdata', package='GLMr')
run_glm(sim_folder)
Reading config from glm2.nml
No WQ config
No diffuser data, setting default values
WARNING: Initial profiles problem - epected 0 wd_init_vals entries but got 30
------------------------------------------------
| General Lake Model (GLM) Version 2.2.0rc5 |
------------------------------------------------
nDays 165825900 timestep 3600.000000
Maximum lake depth is 49.000000
Simulation begins...
Running day 2451636, 0.66% of days complete
Running day 2451637, 1.32% of days complete
---
Running day 2451785, 99.34% of days complete
Running day 2451786, 100.00% of days complete
Wall clock runtime 11 seconds : 00:00:11 [hh:mm:ss]
------------------------------------------------
Run Complete

Visualize
library(glmtools)
out_file<- file.path(sim_folder, 'output.nc')
plot_temp(file=out_file)
About
R package for basic GLM model running
Resources
Readme
Activity
Custom properties
Stars
9 stars
Watchers
15 watching
Forks
15 forks
Report repository
Releases
Packages
Contributors
Languages