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RVis Build Status

RVis

RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.

Prerequisites

RVis is a desktop application for Microsoft Windows. You will need:

  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later

RVis depends on various R packages to provide functionality:

  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.

Installation

Visit the releases page and download the zip archive containing the latest RVis.

[more instructions]

Getting Started

[basics]

[links]

Funding and Development

CEFICHSE

RVis was funded by CEFIC and developed by HSE.

About

Open access PBPK modelling platform

Topics

global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis

Resources

Readme
MIT license
Activity
Custom properties

Stars

9 stars

Watchers

4 watching

Forks

1 fork
Report repository

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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BranchesTags
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RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Repository files navigation
RVis Build Status
RVis
RVis is a modeller's tool for loading and exercising simulation code written in R or MCSim.
Prerequisites
RVis is a desktop application for Microsoft Windows. You will need:
  • Microsoft Windows 10 (April 2018 Update or later)
  • R v3.1 or later
RVis depends on various R packages to provide functionality:
  • To use the sensitivity analysis feature in RVis, you will need to install the R sensitivity package
  • The MCMC feature in RVis can provide diagnostics, for which you will need to install the coda package
  • To use all of the features of the sampling module, you will need to install the dicedesign and mc2d packages.
Installation
Visit the releases page and download the zip archive containing the latest RVis.
[more instructions]
Getting Started
[basics]
[links]
Funding and Development
CEFICHSE
RVis was funded by CEFIC and developed by HSE.
About
Open access PBPK modelling platform
Topics
global-sensitivity-analysismarkov-chain-monte-carlomontecarlomorris-methodpbpkpbpk-modelingrsensitivity-analysis
Resources
Readme
MIT license
Activity
Custom properties
Stars
9 stars
Watchers
4 watching
Forks
1 fork
Report repository
Releases
Packages
Used by
Contributors
Languages