Skip to content
BranchesTags

Latest commit

History

15 Commits

Folders and files

NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf

Repository files navigation

This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository. Picture 1_SkinAtlas

About

No description, website, or topics provided.

Resources

Readme
Activity
Custom properties

Stars

1 star

Watchers

3 watching

Forks

0 forks
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
 blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
if (regex.test(text)) {
found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
} else {
var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
// Create style element if it doesn't exist
var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
style.textContent = '
/* Invert everything except media */
html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
}
/* Restore images, videos, iframes, canvas */
img, video, iframe, canvas, svg, picture, [style*="background-image"] {
filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
}
/* Scrollbars */
::-webkit-scrollbar { background: #1a1a2e !important; }
::-webkit-scrollbar-thumb { background: #444 !important; }
::-webkit-scrollbar-thumb:hover { background: #555 !important; }
/* Selection */
::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
';
}
function removeDarkMode() {
var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
}
// Toggle with Alt+Shift+D
document.addEventListener('keydown', function(e) {
if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
console.log('[Universal Dark Mode] Enabled');
} else {
removeDarkMode();
console.log('[Universal Dark Mode] Disabled');
}
}
});
// Apply on load
applyDarkMode();
// Re-apply on dynamic content
var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
GitHub - GenomicsMachineLearning/SkinCancerAtlas · GitHub
Skip to content
BranchesTags
Latest commit
History
15 Commits
Folders and files
NameName
Last commit message
Last commit date
Main
Main
Supplementary
Supplementary
.gitignore
.gitignore
Main.pdf
Main.pdf
README.md
README.md
Supplementary_resized.pdf
Supplementary_resized.pdf
Repository files navigation
This repository presents analysis code to reproduce Figures and Supplementary Figures for our Skin Spatial Multomics paper. The submitted manuscript is included in this repository.
Picture 1_SkinAtlas
About
No description, website, or topics provided.
Resources
Readme
Activity
Custom properties
Stars
1 star
Watchers
3 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages