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FILE: file reorgnisation pkgdown.yaml #169: Commit f73097f pushed by BCRL-tylu
 1h 5m 15s developmental
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Restore illustrated vignette data on developmental pkgdown.yaml #168: Commit bdbee42 pushed by BCRL-tylu
 10m 20s developmental
developmental
 10m 20s
Recognize Kekule aromatic rings in SMILES pkgdown.yaml #167: Commit b92e0f8 pushed by BCRL-tylu
 11m 40s developmental
developmental
 11m 40s
Fix pkgdown database reference index pkgdown.yaml #166: Commit ff170c9 pushed by BCRL-tylu
 47m 38s developmental
developmental
 47m 38s
Resolve companion packages in pkgdown workflow pkgdown.yaml #165: Commit d74126d pushed by BCRL-tylu
 1h 29m 54s developmental
developmental
 1h 29m 54s
Point companion package installs to maintainer repos pkgdown.yaml #164: Commit 271cea2 pushed by BCRL-tylu
 1m 32s developmental
developmental
 1m 32s
Refactor database access into companion packages pkgdown.yaml #163: Commit 377e1e5 pushed by BCRL-tylu
 1m 12s developmental
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 1m 12s
pages build and deployment pages-build-deployment #133: by github-pagesBot
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 54s gh-pages
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docs: publish paper and update maintainer pkgdown.yaml #162: Commit 594d62e pushed by BCRL-tylu
 55m 7s developmental
developmental
 55m 7s
docs: publish paper and update maintainer pkgdown.yaml #161: Commit 594d62e pushed by BCRL-tylu
 1h 32m 53s main
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pages build and deployment pages-build-deployment #131: by github-pagesBot
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docs: index MALDI matrix annotation functions pkgdown.yaml #160: Commit fc6a119 pushed by BCRL-tylu
 33m 13s developmental
developmental
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ci: cache and verify vignette downloads pkgdown.yaml #159: Commit 90df3e2 pushed by BCRL-tylu
 32m 27s developmental
developmental
 32m 27s
feat: add matrix-aware metabolite annotation pkgdown.yaml #158: Commit 43b2d76 pushed by BCRL-tylu
 47m 59s developmental
developmental
 47m 59s
pages build and deployment pages-build-deployment #130: by github-pagesBot
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feat: add SMINT-compatible spatial alignment pkgdown.yaml #157: Commit 3a344b6 pushed by BCRL-tylu
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docs: add RaMP 3.0 annotation pipeline vignette pkgdown.yaml #156: Commit 882806a pushed by BCRL-tylu
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docs: deploy vignette assets and refresh pathway network pkgdown.yaml #154: Commit c8b3628 pushed by BCRL-tylu
 20m 57s developmental
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 31m 12s developmental
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ci: split pkgdown vignette builds and update DHB Seurat object pkgdown.yaml #152: Commit ab296c0 pushed by BCRL-tylu
 57m 36s developmental
developmental
 57m 36s
fix: handle empty marker tables in mouse brain vignette pkgdown.yaml #151: Commit 5593f4d pushed by BCRL-tylu
 1h 5m 5s developmental
developmental
 1h 5m 5s
, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
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(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
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try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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FILE: file reorgnisation
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Fix pkgdown database reference index
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Resolve companion packages in pkgdown workflow
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
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Fix pkgdown database reference index
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Resolve companion packages in pkgdown workflow
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
if (regex.test(text)) {
found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
} else {
var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
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try {
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Restore illustrated vignette data on developmental
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Recognize Kekule aromatic rings in SMILES
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Fix pkgdown database reference index
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Resolve companion packages in pkgdown workflow
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Refactor database access into companion packages
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
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, 'i');
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, 'i');
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