@Graylab

Gray Lab

Popular repositories Loading

  1. DL4Proteins-notebooks DL4Proteins-notebooksPublic

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook 724 128

  2. IgFold IgFoldPublic

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python 426 72

  3. IgLM IgLMPublic

    Generative Language Modeling for Antibody Design

    Python 196 32

  4. FLAb FLAbPublic

    Fitness landscapes for antibodies

    Python 193 30

  5. GeoDock GeoDockPublic

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python 102 17

  6. AlphaRED AlphaREDPublic

    AlphaFold-initiated replica exchange protein docking

    Python 94 19

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
@Graylab

Gray Lab


Popular repositories
Loading
  1. 
DL4Proteins-notebooks
DL4Proteins-notebooksPublic
    
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook
724

128

  2. 
IgFold
IgFoldPublic
    
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python
426

72

  3. 
IgLM
IgLMPublic
    
Generative Language Modeling for Antibody Design

    Python
196

32

  4. 
FLAb
FLAbPublic
    
Fitness landscapes for antibodies

    Python
193

30

  5. 
GeoDock
GeoDockPublic
    
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python
102

17

  6. 
AlphaRED
AlphaREDPublic
    
AlphaFold-initiated replica exchange protein docking

    Python
94

19


Repositories

Showing 10 of 21 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…