Hassoun Lab: Computational Systems + Synthetic Biology

Agentic flow for causal network inference on transcriptomics

Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data

Transformer-based spectra classifiers

Structural Classification of Biosynthetic Gene Cluster Products

GIF: Guiding LLMs through structured prompting and iterative refinement for molecular fragmentation

Multi-View Projection for metabolite annotation

MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION

Optimized Molecular Generation (OMG) for de novo mass spectrum annotation

Microbial Drug Metabolism (MDM) prediction

This Github repository holds the supporting documents for the paper "Evaluation of search-enabled Pre-trained Large Language Models on retrieval tasks for the PubChem Database"