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Hautaniemi Lab

The Systems Biology of Drug Resistance in Cancer group, University of Helsinki

15 followers
Finland
https://www.helsinki.fi/en/researchgroups/systems-biology-of-drug-resistance-in-cancer
@HautaniemiLab

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histolytics histolyticsPublic
Interpretable Analysis of Histological WSIs
Python 18
CIN-subtypes CIN-subtypesPublic
Discovery of ovarian cancer subtypes based on chromosomal instability signatures
R 6
tumor-evolution-2023 tumor-evolution-2023Public
Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous carcinoma (HGSC)
R 5
jellyfisher jellyfisherPublic
R htmlwidget for Jellyfish
R 5
jellyfish jellyfishPublic
Jellyfish plots for integrative visualization of spatio-temporal tumor evolution and clonal dynamics
TypeScript 4
SegmentQTL SegmentQTLPublic
SegmentQTL is a segmentation-aware molecular quantitative trait loci (molQTL) analysis tool designed for copy number–driven cancers.
Python 4

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Showing 10 of 11 repositories

jellyfish Public
Jellyfish plots for integrative visualization of spatio-temporal tumor evolution and clonal dynamics
HautaniemiLab/jellyfish's past year of commit activity
TypeScript 4MIT 0 7 0 Updated Jul 1, 2026
ADCs Public
HautaniemiLab/ADCs's past year of commit activity
0MIT 0 0 0 Updated Jun 17, 2026
SegmentQTL Public
SegmentQTL is a segmentation-aware molecular quantitative trait loci (molQTL) analysis tool designed for copy number–driven cancers.
HautaniemiLab/SegmentQTL's past year of commit activity
Python 4MIT 0 0 0 Updated May 29, 2026
Actionable Public
Custom code for project Actionable: multi-omics analysis for curating credible actionable driver aberrations in HGSC.
HautaniemiLab/Actionable's past year of commit activity
R 2MIT 1 0 0 Updated May 11, 2026
histolytics Public
Interpretable Analysis of Histological WSIs
HautaniemiLab/histolytics's past year of commit activity
Python 18BSD-3-Clause 0 0 0 Updated Jan 30, 2026
jellyfisher Public
R htmlwidget for Jellyfish
HautaniemiLab/jellyfisher's past year of commit activity
R 5 0 0 0 Updated Nov 26, 2025
pvalplot Public
Create grouped plots with statistical significance annotations easily in python.
HautaniemiLab/pvalplot's past year of commit activity
Python 0MIT 0 0 1 Updated Sep 17, 2025
CIN-subtypes Public
Discovery of ovarian cancer subtypes based on chromosomal instability signatures
HautaniemiLab/CIN-subtypes's past year of commit activity
R 6 0 0 0 Updated Jun 27, 2025
AlleleDoser Public
Germline variant analysis with copy number and phased genotype integration
HautaniemiLab/AlleleDoser's past year of commit activity
R 1MIT 0 0 0 Updated Feb 27, 2025
genomespy-paper-2024-spec Public
Visualization specification related to the GenomeSpy paper by Lavikka, et al. 2024
HautaniemiLab/genomespy-paper-2024-spec's past year of commit activity
HTML 0CC0-1.0 1 0 0 Updated Jun 14, 2024

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