Helmchen Lab

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1. Cascade CascadePublic

   Calibrated inference of spiking from calcium ΔF/F data using deep networks

   Jupyter Notebook 169 52

2. Centripetal_propagation_astrocytes Centripetal_propagation_astrocytesPublic

   Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

   MATLAB 9 1

3. CaImAn_DendriteAnalysis CaImAn_DendriteAnalysisPublic

   Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

   Jupyter Notebook 7 3

4. OCIA OCIAPublic

   Calcium Imaging Analysis pipeline with a flexible framework

   MATLAB 3 3

5. td_dendrites td_dendritesPublic

   Code to simulate the computational model for the manuscript 'Error representations in apical dendrites of neocortical layer 5 neurons during learning'

   Python 2

6. CaImAn_LocomotionAnalysis CaImAn_LocomotionAnalysisPublic

   Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

   Jupyter Notebook 1 1